View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11547_low_15 (Length: 289)
Name: NF11547_low_15
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 7199579 - 7199842
Alignment:
| Q |
16 |
ttatcaatgtttgctttaatattttcttttcaatattcattttttattgaataaattcatgtgagttccacctaaagtgacgagctcctataatatttaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
7199579 |
ttatcaatgtttgctttaatattttcttttcaatattcattttttattgaataaattcacgtgagttccacctaaagtgacgagctcatataatttttag |
7199678 |
T |
|
| Q |
116 |
ccgctataaaaatgagttaagaaaatgttagaatgagcgttggtaacctacttcgatcttagctgagatgaaacatatgttcgttaagtatcaattttac |
215 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7199679 |
ccactataaaaatgagttaaaaaaatattagaatgagtgttggtaacctacttcgatcttagctgagatgaaacatatgttcgttaagtatcaattttac |
7199778 |
T |
|
| Q |
216 |
tcttacatcatattattagaagtccgtcacaggaattgcttttttcctatctgtttttattcat |
279 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||||||| |||||||| ||||| ||||| |
|
|
| T |
7199779 |
tcttaggtcatattattagaagtccgtcacggaaattgcttttctcctatctatttttgttcat |
7199842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University