View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_17 (Length: 266)
Name: NF11547_low_17
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 29719349 - 29719136
Alignment:
| Q |
15 |
caaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcagaagagaaccttgatcatac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29719349 |
caaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcaaaagagaaccttgatcatac |
29719250 |
T |
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| Q |
115 |
atgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctgaagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719249 |
atgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctgaagt |
29719150 |
T |
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| Q |
215 |
cttgggaacttagt |
228 |
Q |
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|||||||||||||| |
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| T |
29719149 |
cttgggaacttagt |
29719136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 29690635 - 29690432
Alignment:
| Q |
15 |
caaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcagaagagaaccttgatcatac |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29690635 |
caaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttc-----aaaaccttgatcatac |
29690541 |
T |
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| Q |
115 |
atgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctgaagt |
214 |
Q |
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||||||||| ||| | |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690540 |
atgaaaatt-----aagaacagtgaaggtggaaaattgtgtggtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctgaagt |
29690446 |
T |
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| Q |
215 |
cttgggaacttagt |
228 |
Q |
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|||||||||||||| |
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| T |
29690445 |
cttgggaacttagt |
29690432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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