View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_19 (Length: 250)
Name: NF11547_low_19
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48708817 - 48708581
Alignment:
| Q |
1 |
gtactaaacttagataaagtcttactttttctgtcatnnnnnnncagtgaacttatctttaaaattggtataagtttgcattaaaattaaatcaaataat |
100 |
Q |
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| T |
48708817 |
gtactaaacttagataaagtcttagtttttctgtcataaaaaaacagtgaacttatctttaaaattggtataagtttgcattaaaattaaatcaaataat |
48708718 |
T |
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| Q |
101 |
ccagcatgatattgaagtctcacttgcaaaaagtgacacatacaagaacatgctcaatgatttgatgggaagctgcaagcacaacccgatttgaactttc |
200 |
Q |
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| T |
48708717 |
ccagcatgatattgaagtctcacttgcaaaaagtgacacatacaagaacatgctcaatgatttgatgggaagctgcaagcacaacccgatttgaactttc |
48708618 |
T |
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| Q |
201 |
tggctgtgtctattgactttaaacgatgttggacttc |
237 |
Q |
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| T |
48708617 |
tggctgtgtgtattgactttaaacgatgttggacttc |
48708581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 12958833 - 12958791
Alignment:
| Q |
194 |
aactttctggctgtgtctattgactttaaacgatgttggactt |
236 |
Q |
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| T |
12958833 |
aactttttggctgtgtgtattgactttaaacgatgtgggactt |
12958791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 13866698 - 13866764
Alignment:
| Q |
58 |
tttaaaattggtataagtttgcattaaaattaaatcaaataatccagcatgatattgaagtctcact |
124 |
Q |
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| T |
13866698 |
tttagaattggtatatgttaactttagaattaaatcaaataatccatcatgatattaaagtatcact |
13866764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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