View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_22 (Length: 239)
Name: NF11547_low_22
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48708895 - 48709117
Alignment:
| Q |
1 |
ttcttcacatacaaaattgctaacaatgttttgcacttggcataggttgaattgatgggggtagtctaacattcatattcctactctactcccatacaag |
100 |
Q |
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| T |
48708895 |
ttcttcacatacaaaattgctaacaatgttttgcacttggcataggttgaattgatgggggtagtctaacattcatattcctactctactcccatacaag |
48708994 |
T |
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| Q |
101 |
gtcttgatcaccagcgacagttctcattacttcttgttgaagatgacaagattaacatcatgataacacaatccatgatgaagcgatggagcagaagcag |
200 |
Q |
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| T |
48708995 |
gtcttgatcaccagcgacagttctcattacttcttgttgaagatgagaagattaatatcatgataacacaatccatgatgaaacgatggagcagaagcag |
48709094 |
T |
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| Q |
201 |
tgcgtgcggtcaggcgctgcttg |
223 |
Q |
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|||||||||||| |||||||||| |
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| T |
48709095 |
tgcgtgcggtcaagcgctgcttg |
48709117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 48697719 - 48697771
Alignment:
| Q |
130 |
cttcttgttgaagatgacaagattaacatcatgataacacaatccatgatgaa |
182 |
Q |
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||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
48697719 |
cttcttgttgaagataacaagattaacatcatggtgacacaatccatgatgaa |
48697771 |
T |
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