View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_24 (Length: 221)
Name: NF11547_low_24
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 24152042 - 24151838
Alignment:
| Q |
13 |
cagagacgacaacagcgaaaacttccctgcagagtctacgacataaagcatcgtgatagattgatgagggggaaagaaaactgaagccaccaccgtggaa |
112 |
Q |
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| T |
24152042 |
cagagacgacaacagcgaaaacttccctgcagagtctacggcataaagcatcgtgatagattgaggagggggaaagaaaactgaagccaccaccgtggaa |
24151943 |
T |
|
| Q |
113 |
gtaaatgatgacaggaagggaggttgttttagtgccaccaccat------------ctccggcaacatctccggcgacggtgggagtgaagagacgaaac |
200 |
Q |
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| T |
24151942 |
gtaaatgatgacaggaagggaggttgttttagtggcaccaccatctccagtaacctctccggcaacttctccggcgacggtgggagtgaagagacgaaac |
24151843 |
T |
|
| Q |
201 |
caaac |
205 |
Q |
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||||| |
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| T |
24151842 |
caaac |
24151838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 24179234 - 24179113
Alignment:
| Q |
84 |
gaaagaaaactgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtgccaccaccatctccggcaacatctccggcgacggtgg |
183 |
Q |
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||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||| ||| ||| ||||||||||||||| || |||||||| || |||| |
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| T |
24179234 |
gaaagaaaagtgtagccaccgccgtggaagaaaatgacgacaggaagggaggttgctttggtggcaccaccatctccggtgacttctccggcaacagtgg |
24179135 |
T |
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| Q |
184 |
gagtgaagagacgaaaccaaac |
205 |
Q |
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| || ||||||||||||||||| |
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| T |
24179134 |
gggtaaagagacgaaaccaaac |
24179113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 24168869 - 24168677
Alignment:
| Q |
13 |
cagagacgacaacagcgaaaacttccctgcagagtctacgacataaagcatcgtgatagattgatgagggggaaagaaaactgaagccaccaccgtggaa |
112 |
Q |
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||||||| |||||| || | | ||||| |||||||||||| || |||||||| | ||||| || |||||| ||||| | ||||||||||||||||||| |
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| T |
24168869 |
cagagacaacaacaacggatatttcccggcagagtctacggcaaaaagcatcatagtagatagaggaggggcaaagataggtgaagccaccaccgtggaa |
24168770 |
T |
|
| Q |
113 |
gtaaatgatgacaggaagggaggttgttttagtgccaccaccatctccggcaacatctccggcgacggtgggagtgaagagacgaaaccaaac |
205 |
Q |
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| |||||| || ||||||||||||||||| || |||||||||||||| | || |||||| | || ||||| || |||||||| |||||||| |
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| T |
24168769 |
gaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgccaacagtgggtgtaaagagacggaaccaaac |
24168677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 24189040 - 24188920
Alignment:
| Q |
84 |
gaaagaaaactgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtgccaccaccatctccggcaacatctccggcgacggtgg |
183 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||| ||| ||||||||||| ||||| ||| |||||||||| ||| || |||||||| || || | |
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| T |
24189040 |
gaaagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttg |
24188941 |
T |
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| Q |
184 |
gagtgaagagacgaaaccaaa |
204 |
Q |
| |
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|||| |||||||| ||||||| |
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|
| T |
24188940 |
gagtaaagagacggaaccaaa |
24188920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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