View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_25 (Length: 219)
Name: NF11547_low_25
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41547957 - 41547760
Alignment:
| Q |
1 |
tgtgttgagaaaaaagaatgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttgaagtgttaagaaagaag |
100 |
Q |
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| T |
41547957 |
tgtgttgagaaaaaagaatgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttgaagtgttaagaaagaag |
41547858 |
T |
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| Q |
101 |
agtgatgagctagagtgtgaggttaataagttgaaggaagatagggtggaggatgggaacaaatttgaagttctaagaaaaaagaatgatgacttgaa |
198 |
Q |
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| T |
41547857 |
agtgatgagctagagtgtgaggttaataatttgaaggaagatagggtggaggatgggaacaaatttgaagttctaagaaaaaagaatgatgacttgaa |
41547760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 41548040 - 41547850
Alignment:
| Q |
2 |
gtgttgagaaaaaagaatgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttgaagtgttaagaaagaaga |
101 |
Q |
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| T |
41548040 |
gtgttgagacaaaagaatggtgagttggagtgtgaggttaataaattggaagaagaaagggtggaggatgggaacaaatttgatgtgttgagaaaaaaga |
41547941 |
T |
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| Q |
102 |
gtgatgagctagagtgtgaggttaataagttgaaggaagatagggtggaggatgggaacaaatttgaagttctaagaaaaaagaatgatga |
192 |
Q |
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| T |
41547940 |
atgatgagttggagtgtgaggttaataggttgaaggaagatatggtggagtatgggaacaaatttgaagtgttaagaaagaagagtgatga |
41547850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 41548045 - 41547934
Alignment:
| Q |
81 |
ttgaagtgttaagaaagaagagtgatgagctagagtgtgaggttaataagttgaaggaagatagggtggaggatgggaacaaatttgaagttctaagaaa |
180 |
Q |
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| T |
41548045 |
ttgaagtgttgagacaaaagaatggtgagttggagtgtgaggttaataaattggaagaagaaagggtggaggatgggaacaaatttgatgtgttgagaaa |
41547946 |
T |
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| Q |
181 |
aaagaatgatga |
192 |
Q |
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| T |
41547945 |
aaagaatgatga |
41547934 |
T |
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