View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_26 (Length: 218)
Name: NF11547_low_26
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_26 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47280573 - 47280790
Alignment:
| Q |
1 |
aatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgata |
100 |
Q |
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| T |
47280573 |
aatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgata |
47280672 |
T |
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| Q |
101 |
ggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacag |
200 |
Q |
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| T |
47280673 |
ggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacag |
47280772 |
T |
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| Q |
201 |
accaaacaaactgggact |
218 |
Q |
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| T |
47280773 |
accaaacaaactgggact |
47280790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 49060519 - 49060699
Alignment:
| Q |
27 |
aaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgc |
126 |
Q |
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| T |
49060519 |
aaaccagatattcaaaaacattttgataatgtaaaatttgaaataaaattcagtaaagctcgaggaaattgataagatataaaaattgttt--gtgttgc |
49060616 |
T |
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| Q |
127 |
agagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaa |
209 |
Q |
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| T |
49060617 |
aggcagagtgaagaacatactgtcaatgcctaactgattaacagcagcaacaaacttgcggtgcagctccacagaccaaacaa |
49060699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 47274917 - 47275075
Alignment:
| Q |
58 |
taaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcct |
157 |
Q |
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| T |
47274917 |
taaaatgagaaataaaaatcggtcaagctcgaggaaattgataggatataaaaattgttt--gtgttgcggacagagtggagaacatactgtcaatgcct |
47275014 |
T |
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| Q |
158 |
aactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggact |
218 |
Q |
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| T |
47275015 |
aactgattaacagcagcaacaaatttgtggtgcagctccacagaccaaacagactgggact |
47275075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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