View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_3 (Length: 576)
Name: NF11547_low_3
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 41322807 - 41322417
Alignment:
| Q |
18 |
agtttatctcttcacaacatcagtacttattcaatgtgcatctatatagtgtctgatacgatgttgattttattgtatctaaacaacataactcnnnnnn |
117 |
Q |
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| T |
41322807 |
agtttatctcttcacaacatcagtacttattcaatgtgcatctatatagtgtctgatacgatgttgattttagtgtatctaaacaacataactcgttttt |
41322708 |
T |
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| Q |
118 |
naactagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaaatcttaccatatattata |
217 |
Q |
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| T |
41322707 |
taactagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaaatcttaccatatattata |
41322608 |
T |
|
| Q |
218 |
ttatacaaatacacaaaataaacattgattttataaattgaattttactagtgaaaggcctaaaacagaagaaatctttggcagggtcattgggataggc |
317 |
Q |
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| T |
41322607 |
ttatacaaatacacaaaacaaacatttattttataaattgaattttactagtgaaaggcctaaaacagaagaaatctttggcagggtcattgggataggc |
41322508 |
T |
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| Q |
318 |
tcaaacaatgggtctcaatgggatttgtgttactcacaatagcaattatccttcattttacaaatggtaagctagtgtgacaaccacttct |
408 |
Q |
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| T |
41322507 |
tcaaacaatgggtctcaatgggatttgtgttactcacaatagcaattatccttcattttacaaatggtaagctagtgtgacaaccacttct |
41322417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 471 - 567
Target Start/End: Complemental strand, 41322353 - 41322257
Alignment:
| Q |
471 |
atttatggaatatttcagctgtcccaattaataagcaactgtatagtatcagctatgtttgtttcacagctggaatagctggaattgtcttctctgc |
567 |
Q |
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| T |
41322353 |
atttatggaatatttcagctgtcccaattaataagcaactgtatagtatcagctatgtttgtttcacagctggaatagctggaattgtcttctctgc |
41322257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 122 - 400
Target Start/End: Complemental strand, 41308652 - 41308373
Alignment:
| Q |
122 |
tagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaaatcttaccatatatta--tatt |
219 |
Q |
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| T |
41308652 |
tagttccatatcagcaatcctctcaggcaccattggcatccattatgggcacgtcttgattcatttcaaggttataaaatctcaccctatgctaactatt |
41308553 |
T |
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| Q |
220 |
atacaaatacacaaaataaacattgattttataaattgaattttactagtgaaaggcctaaaacagaag-aaatc----tttggcagggtcattgggata |
314 |
Q |
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| T |
41308552 |
atac--acccactaaataaatgtctattctataattgcaatt----tagtgaaaggcctaaaaatgaagtgaatcttaatttgacagagtcattcagaga |
41308459 |
T |
|
| Q |
315 |
ggctcaaacaatgggtctcaatgggatttgtgttactcacaatagcaattatccttcattttacaaatggtaagctagtgtgacaa |
400 |
Q |
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| T |
41308458 |
ggctcaaacaatggttctcaatggggtttgtgttactcgtagtcgctattatccttcactttacagatggtaagttagtgtgacaa |
41308373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 41308166 - 41308095
Alignment:
| Q |
494 |
ccaattaataagcaactgtatagtatcagctatgtttgtttcacagctggaatagctggaattgtcttctct |
565 |
Q |
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| T |
41308166 |
ccaatcaacaagcaactctatagcttcagctatgtttgtttcacagctggggcagctggaattatcttctct |
41308095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 27659941 - 27660020
Alignment:
| Q |
120 |
actagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaa |
199 |
Q |
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| T |
27659941 |
actagttctatatcagctatcctatctgggaccattggcatccactatggacatgtcttgattcatttcaaggttacaaa |
27660020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 566
Target Start/End: Original strand, 27660300 - 27660392
Alignment:
| Q |
474 |
tatggaatatttcagctgtcccaattaataagcaactgtatagtatcagctatgtttgtttcacagctggaatagctggaattgtcttctctg |
566 |
Q |
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| T |
27660300 |
tatggaataatgcagctattccaattaacaagcaattgtacagcattagctatgtttgtttcacatctggagctgctggaattgtcttctctg |
27660392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 27660103 - 27660203
Alignment:
| Q |
294 |
tttggcagggtcattgggataggctcaaacaatgggtctcaatgggatttgtgttactcacaatagcaattatccttcattttacaaatggtaagctagt |
393 |
Q |
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|||| |||||||||| || |||||||| |||||| |||||||||| |||||||| ||| ||| || || |||||||||||||||||||||||||| |
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| T |
27660103 |
tttgacagggtcattctgagaggctcaagcaatggctctcaatgggggttgtgttattcatcctaggcatcattcttcattttacaaatggtaagctagt |
27660202 |
T |
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| Q |
394 |
g |
394 |
Q |
| |
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| T |
27660203 |
g |
27660203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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