View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11547_low_5 (Length: 479)

Name: NF11547_low_5
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11547_low_5
NF11547_low_5
[»] chr4 (5 HSPs)
chr4 (271-340)||(13072495-13072564)
chr4 (376-448)||(13071938-13072010)
chr4 (185-249)||(13072774-13072838)
chr4 (95-166)||(13067337-13067408)
chr4 (65-111)||(13056270-13056315)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 13072564 - 13072495
Alignment:
Q  271 ttgaaggatcttgggtcaaagttttagttcaaaagaaagattcaataggctgtacaacatagttcctgaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072564 ttgaaggatcttgggtcaaagttttagttcaaaagaaagattcaataggctgtacaacatagttcctgaa 13072495  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 13072010 - 13071938
Alignment:
Q  376 gatgaaatgttgtctaaaaatttgtttataaatggaggaaatcctcaccttataagtaatgttattgactaat 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13072010 gatgaaatgttgtctaaaaatttgtttataaatggaggaaatcctcaccttataagcaatgttattgattaat 13071938  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 13072838 - 13072774
Alignment:
Q  185 aacttcacacttaccatgccacaacatatctcacattggaggagaagtggtgatggaggtagaga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072838 aacttcacacttaccatgccacaacatatctcacattggaggagaagtggtgatggaggtagaga 13072774  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 13067408 - 13067337
Alignment:
Q  95 cattttaagttagaaaaaacacattgacaaaaattgtagcaaactatgtatgtgtgtcagtaattaattgat 166  Q
    ||||||||||| |||| |||| ||||||| ||||||||||||||||| || |||||||  |||| |||||||    
T  13067408 cattttaagttcgaaataacatattgacacaaattgtagcaaactatataagtgtgtccataatcaattgat 13067337  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 13056315 - 13056270
Alignment:
Q  65 tgagagtggtcctcaattgttacctgcaaacattttaagttagaaaa 111  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  13056315 tgagggtggtcctcaattgttacctg-taacattttaagttagaaaa 13056270  T

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