View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11547_low_7 (Length: 425)

Name: NF11547_low_7
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11547_low_7
NF11547_low_7
[»] chr4 (17 HSPs)
chr4 (161-417)||(34726753-34727009)
chr4 (1-53)||(15471382-15471434)
chr4 (1-53)||(23436763-23436815)
chr4 (1-53)||(35149924-35149976)
chr4 (1-53)||(29449514-29449566)
chr4 (2-53)||(390375-390426)
chr4 (2-53)||(3260772-3260823)
chr4 (2-53)||(17667328-17667379)
chr4 (1-53)||(26394939-26394990)
chr4 (1-53)||(29383540-29383592)
chr4 (1-53)||(29456198-29456250)
chr4 (2-51)||(45003689-45003738)
chr4 (1-54)||(52499800-52499852)
chr4 (1-53)||(1583159-1583211)
chr4 (2-54)||(34771488-34771540)
chr4 (1-53)||(47873192-47873244)
chr4 (1-53)||(54845717-54845769)
[»] chr6 (16 HSPs)
chr6 (1-54)||(7238135-7238188)
chr6 (1-53)||(1069914-1069966)
chr6 (1-55)||(17308976-17309030)
chr6 (1-55)||(21966418-21966472)
chr6 (1-54)||(16224463-16224516)
chr6 (1-53)||(15298921-15298973)
chr6 (1-53)||(25463134-25463186)
chr6 (1-53)||(34134731-34134783)
chr6 (2-53)||(11582906-11582957)
chr6 (2-53)||(25316442-25316493)
chr6 (2-53)||(26203936-26203987)
chr6 (2-53)||(33874089-33874140)
chr6 (1-53)||(21897085-21897137)
chr6 (1-53)||(21965726-21965778)
chr6 (1-54)||(15332915-15332967)
chr6 (1-53)||(30800226-30800278)
[»] chr7 (27 HSPs)
chr7 (1-53)||(2027042-2027094)
chr7 (1-53)||(8214118-8214170)
chr7 (1-53)||(40923781-40923833)
chr7 (1-53)||(42057820-42057872)
chr7 (2-53)||(11300460-11300511)
chr7 (1-53)||(12404777-12404829)
chr7 (1-53)||(26090762-26090814)
chr7 (2-54)||(40685576-40685628)
chr7 (2-53)||(749152-749203)
chr7 (2-53)||(2280359-2280410)
chr7 (2-53)||(11878369-11878420)
chr7 (2-53)||(48988742-48988793)
chr7 (2-52)||(32626699-32626749)
chr7 (1-53)||(13964802-13964854)
chr7 (1-53)||(17727139-17727191)
chr7 (1-53)||(18437978-18438030)
chr7 (1-53)||(30603634-30603686)
chr7 (1-53)||(46649090-46649142)
chr7 (2-53)||(20020480-20020531)
chr7 (2-53)||(39050167-39050218)
chr7 (1-54)||(49149843-49149896)
chr7 (1-53)||(49156534-49156586)
chr7 (1-53)||(641855-641907)
chr7 (1-53)||(5188110-5188161)
chr7 (1-53)||(15630779-15630831)
chr7 (1-53)||(33404048-33404100)
chr7 (1-53)||(37284512-37284564)
[»] chr1 (21 HSPs)
chr1 (2-53)||(52399550-52399601)
chr1 (3-56)||(24065570-24065623)
chr1 (1-53)||(33684979-33685031)
chr1 (2-53)||(26739884-26739935)
chr1 (1-54)||(6739818-6739871)
chr1 (1-53)||(18417427-18417479)
chr1 (1-53)||(24423302-24423354)
chr1 (1-53)||(38908875-38908927)
chr1 (1-53)||(38911723-38911775)
chr1 (1-53)||(39093570-39093622)
chr1 (2-53)||(3653462-3653513)
chr1 (2-53)||(11385244-11385295)
chr1 (2-53)||(39190472-39190523)
chr1 (2-53)||(48427162-48427213)
chr1 (2-55)||(31564777-31564830)
chr1 (1-53)||(20278027-20278079)
chr1 (1-53)||(41050991-41051042)
chr1 (2-53)||(31536060-31536111)
chr1 (1-53)||(17145576-17145628)
chr1 (1-53)||(17378720-17378771)
chr1 (1-53)||(29152135-29152187)
[»] chr3 (17 HSPs)
chr3 (1-54)||(53572103-53572156)
chr3 (1-53)||(51848448-51848500)
chr3 (2-55)||(3107721-3107774)
chr3 (1-54)||(21351501-21351554)
chr3 (2-54)||(28752023-28752075)
chr3 (1-53)||(29492777-29492829)
chr3 (1-53)||(50656842-50656894)
chr3 (1-53)||(51854586-51854638)
chr3 (2-53)||(3783595-3783646)
chr3 (2-53)||(17596032-17596083)
chr3 (2-53)||(28758191-28758242)
chr3 (1-53)||(21152273-21152324)
chr3 (1-53)||(23866598-23866649)
chr3 (2-53)||(45610949-45611000)
chr3 (2-53)||(54518740-54518791)
chr3 (1-54)||(3554512-3554564)
chr3 (1-53)||(54833999-54834051)
[»] chr2 (21 HSPs)
chr2 (1-54)||(20964133-20964186)
chr2 (1-54)||(30197348-30197401)
chr2 (1-54)||(35584617-35584670)
chr2 (2-54)||(4072363-4072415)
chr2 (1-53)||(40584783-40584837)
chr2 (1-54)||(1060960-1061013)
chr2 (1-53)||(1066344-1066396)
chr2 (2-53)||(4076722-4076773)
chr2 (2-53)||(11361075-11361126)
chr2 (2-53)||(28926762-28926813)
chr2 (2-53)||(42552465-42552516)
chr2 (2-55)||(29065776-29065829)
chr2 (2-53)||(36985363-36985414)
chr2 (2-53)||(44091865-44091916)
chr2 (1-51)||(27728814-27728863)
chr2 (1-53)||(72243-72293)
chr2 (1-54)||(21121331-21121384)
chr2 (1-53)||(21604071-21604124)
chr2 (1-53)||(23832665-23832717)
chr2 (1-53)||(36593656-36593708)
chr2 (1-53)||(33354-33406)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-53)||(49262-49314)
[»] chr8 (29 HSPs)
chr8 (1-53)||(14765060-14765112)
chr8 (1-55)||(4979630-4979684)
chr8 (3-53)||(14562913-14562963)
chr8 (1-54)||(35033147-35033200)
chr8 (1-53)||(13362730-13362782)
chr8 (2-54)||(28979998-28980050)
chr8 (2-54)||(33799180-33799232)
chr8 (2-53)||(28985219-28985270)
chr8 (2-53)||(37879144-37879195)
chr8 (2-56)||(213296-213350)
chr8 (2-56)||(238904-238958)
chr8 (2-56)||(726919-726973)
chr8 (2-56)||(752642-752696)
chr8 (2-56)||(792259-792313)
chr8 (2-56)||(799420-799474)
chr8 (2-56)||(850813-850867)
chr8 (1-53)||(10949508-10949560)
chr8 (1-53)||(10957513-10957565)
chr8 (1-53)||(16888074-16888126)
chr8 (1-53)||(33828640-33828691)
chr8 (1-53)||(35540351-35540402)
chr8 (1-53)||(36801214-36801265)
chr8 (2-53)||(37235046-37235097)
chr8 (1-53)||(4521548-4521600)
chr8 (5-53)||(14737602-14737650)
chr8 (1-53)||(23225521-23225573)
chr8 (1-53)||(27910362-27910414)
chr8 (1-53)||(27956781-27956833)
chr8 (1-53)||(41242933-41242985)
[»] chr5 (21 HSPs)
chr5 (1-53)||(30780319-30780371)
chr5 (1-53)||(11994395-11994447)
chr5 (1-53)||(14615748-14615800)
chr5 (1-53)||(22249031-22249083)
chr5 (1-53)||(37540821-37540873)
chr5 (1-53)||(37548365-37548417)
chr5 (2-53)||(5583085-5583136)
chr5 (2-53)||(14883151-14883202)
chr5 (2-53)||(14889828-14889879)
chr5 (2-53)||(18895802-18895853)
chr5 (2-53)||(24795851-24795902)
chr5 (2-53)||(24801218-24801269)
chr5 (2-53)||(40011779-40011830)
chr5 (2-54)||(7508851-7508902)
chr5 (1-53)||(17939726-17939778)
chr5 (1-53)||(25845595-25845647)
chr5 (1-53)||(25852230-25852282)
chr5 (1-53)||(43028292-43028343)
chr5 (2-53)||(41879526-41879577)
chr5 (1-54)||(20339845-20339898)
chr5 (1-53)||(20346440-20346492)
[»] scaffold0606 (1 HSPs)
scaffold0606 (1-53)||(435-487)
[»] scaffold0654 (1 HSPs)
scaffold0654 (2-53)||(8536-8587)
[»] scaffold0126 (1 HSPs)
scaffold0126 (2-53)||(31106-31157)
[»] scaffold0457 (1 HSPs)
scaffold0457 (1-51)||(13035-13085)
[»] scaffold0089 (1 HSPs)
scaffold0089 (1-54)||(19329-19382)
[»] scaffold2150 (1 HSPs)
scaffold2150 (1-53)||(859-910)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-53)||(16818-16870)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-53)||(63950-64002)
[»] scaffold0154 (1 HSPs)
scaffold0154 (2-53)||(19218-19269)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-54)||(10941-10995)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-53)||(10507-10559)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-53)||(12994-13046)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-53)||(31183-31235)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-45)||(33490-33534)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 161 - 417
Target Start/End: Original strand, 34726753 - 34727009
Alignment:
Q  161 cttctgaagatcagtaactgaatcacatgttatctttgtcctggagctcttcttcccattaacaagctttagttccaaccgatataacacacatgcatca 260  Q
    |||||| ||||||| ||||||||||  ||||||  ||| | ||||| |||||||||||| ||||||||||||||| || || |||||  ||||| |||||    
T  34726753 cttctgtagatcagcaactgaatcatttgttattcttgccttggagttcttcttcccatcaacaagctttagttctaaacggtataaggcacatacatca 34726852  T
Q  261 cacttgctaatttcatactcataaagatgccactcaaaatggtttagtggttgtggatccatgtagtaggaactcttcagccctccaaactctttcatca 360  Q
    ||||||||||| ||||| || ||||| ||||| ||||||||||| || || ||||||||||| || ||||| |||||||| |||||||| || || || |    
T  34726853 cacttgctaatctcatattcgtaaaggtgccattcaaaatggttcagaggctgtggatccatataataggatctcttcagacctccaaattcattgataa 34726952  T
Q  361 cttgctttctggattcatgccatccccgcccattataatcaggcaatgacctttgct 417  Q
    |||||||||| ||||| ||||| || || ||| | ||||| ||||||||||| ||||    
T  34726953 cttgctttctagattcgtgccaaccacgtccactgtaatctggcaatgacctctgct 34727009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15471382 - 15471434
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  15471382 ttactctgatgtatatatgctattttattgcttttgggtaacggggtgttaca 15471434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23436763 - 23436815
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  23436763 ttactctgatgtatatatgctgagttattgtttttgggtaacggggtgttaca 23436815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35149924 - 35149976
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  35149924 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 35149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29449514 - 29449566
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  29449514 ttactctgatgtatataagctattttatttgttttgggtaacggggtgttaca 29449566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 390426 - 390375
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  390426 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 390375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3260772 - 3260823
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  3260772 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 3260823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 17667379 - 17667328
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  17667379 tactctgatgtttatatgctattttatttcttttgggtaacggggtgttaca 17667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26394990 - 26394939
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| ||||||  |||||||||||||||||||||    
T  26394990 ttactctgatgtttatatgctattttattg-ctttgggtaacggggtgttaca 26394939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29383540 - 29383592
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||||    
T  29383540 ttactctgatgtataaatgttatttaattgtttttggataacggggtgttaca 29383592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29456198 - 29456250
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||| ||||| |||||  |||||||||||||| |||||||    
T  29456198 ttactctgatgtatataagctattttatttgttttgggtaacgggatgttaca 29456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 45003738 - 45003689
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgtta 51  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||    
T  45003738 tactctgatgaatatttgttatataattgtttttgggtaacggggtgtta 45003689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52499852 - 52499800
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||| |||||||| |||||| | |||| |||||||||||||||||||||||    
T  52499852 ttactcttatgtatat-tgctatttaattgcttttgggtaacggggtgttacag 52499800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1583211 - 1583159
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  1583211 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 1583159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 34771540 - 34771488
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||| |||| || ||| | | ||||||||||||||||||||||||||    
T  34771540 tactctgatgaatatttgttatttaaatgtttttgggtaacggggtgttacag 34771488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47873192 - 47873244
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||||||||| ||||||||||||||||    
T  47873192 ttactctgatgaatatttgttatttaattgtttttgtgtaacggggtgttaca 47873244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54845717 - 54845769
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | ||||||||||||||| |||||||||||    
T  54845717 ttactctgatgaatatttgttatttaattgtttttgggtaatggggtgttaca 54845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7238135 - 7238188
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238135 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 7238188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1069966 - 1069914
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  1069966 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 1069914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 17309030 - 17308976
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||||    
T  17309030 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttacaga 17308976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21966418 - 21966472
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    ||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||    
T  21966418 ttactctgatgtataaatgttatttaattgtttttgggtaacggggtgttacaga 21966472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16224463 - 16224516
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||||||||    
T  16224463 ttactctgatgtatatttgctatttaattgcttttgggtaacggggtgttacag 16224516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15298973 - 15298921
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  15298973 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 15298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25463186 - 25463134
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  25463186 ttactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 25463134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34134731 - 34134783
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  34134731 ttactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 34134783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 11582957 - 11582906
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  11582957 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 11582906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 25316442 - 25316493
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| || ||| | |||||||||||||||||||||||||||    
T  25316442 tactctgatgtatatttgatatttaattgtttttgggtaacggggtgttaca 25316493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 26203936 - 26203987
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| || ||| | |||||||||||||||||||||||||||    
T  26203936 tactctgatgtatatttgatatttaattgtttttgggtaacggggtgttaca 26203987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 33874140 - 33874089
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  33874140 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 33874089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21897085 - 21897137
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || |||||||||||||||| |||||    
T  21897085 ttactctgatgtatttatgctattttactgcttttgggtaacggggtattaca 21897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21965778 - 21965726
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||| |||||| ||| ||| | |||||||||||||||||||||||||||    
T  21965778 ttactctgttgtataaatgttatttaattgtttttgggtaacggggtgttaca 21965726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15332915 - 15332967
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||| ||| |||||| ||| |||||||||||||||||||    
T  15332915 ttactctgatgtttatatgttattttattgcttt-gggtaacggggtgttacag 15332967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30800226 - 30800278
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||  || ||| | |||| ||||||||||||||||||||||    
T  30800226 ttactctgatgtataattgttatttaattgcttttgggtaacggggtgttaca 30800278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2027042 - 2027094
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2027042 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 2027094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8214118 - 8214170
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  8214118 ttactctgatgtttatatgctattttactgtttttgggtaacggggtgttaca 8214170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40923781 - 40923833
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  40923781 ttactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 40923833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42057872 - 42057820
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  42057872 ttactctgatgtttatatgctattttactgtttttgggtaacggggtgttaca 42057820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11300460 - 11300511
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  11300460 tactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 11300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12404777 - 12404829
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  12404777 ttactctgatgtatttatgctattttattgcatttgggtaacggggtgttaca 12404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26090762 - 26090814
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  26090762 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 26090814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 40685576 - 40685628
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||||||||| | |||| |||||||||||||||||||||||    
T  40685576 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttacag 40685628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 749203 - 749152
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  749203 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 749152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 2280410 - 2280359
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  2280410 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 2280359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 11878420 - 11878369
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  11878420 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 11878369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 48988742 - 48988793
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  48988742 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 48988793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 32626749 - 32626699
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttac 52  Q
    ||||||||||||||| |||||| | |||| |||||||||||||||||||||    
T  32626749 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttac 32626699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13964802 - 13964854
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| || ||| | |||| ||||||||||||||||||||||    
T  13964802 ttactctgatgtatatttgttatttaattgcttttgggtaacggggtgttaca 13964854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17727139 - 17727191
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | ||||||||| |||||||||||||||||    
T  17727139 ttactctgatgtataaatgttatttaattgttttttggtaacggggtgttaca 17727191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18437978 - 18438030
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| || ||| ||| | |||||||||||||||||||||||||||    
T  18437978 ttactctgatgtttaaatgttatttaattgtttttgggtaacggggtgttaca 18438030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30603634 - 30603686
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| | |||||| | |||| ||||||||||||||||||||||    
T  30603634 ttactctgatgtatgtttgctatttaattgcttttgggtaacggggtgttaca 30603686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46649142 - 46649090
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| || ||| | |||| ||||||||||||||||||||||    
T  46649142 ttactctgatgtatatctgttatttaattgcttttgggtaacggggtgttaca 46649090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 20020480 - 20020531
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  20020480 tactctgatgaatatttgttatttaattgtttttgggtaacggggtgttaca 20020531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 39050218 - 39050167
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||| |||| |||||||||| | |||| ||||||||||||||||||||||    
T  39050218 tactctaatgtttatatgctatttaattgcttttgggtaacggggtgttaca 39050167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49149896 - 49149843
Alignment:
Q  1 ttactctgatgtatatatgctatgtt-attgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||| |||||||| || |||||||| |||||||||||||||||||    
T  49149896 ttactctgatgtatttatgctatatttattgtttt-gggtaacggggtgttacag 49149843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49156586 - 49156534
Alignment:
Q  1 ttactctgatgtatatatgctatgtt-attgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  49156586 ttactctgatgtatttatgctatatttattgtttt-gggtaacggggtgttaca 49156534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 641907 - 641855
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| || ||| ||| | |||||||||| ||||||||||||||||    
T  641907 ttactctgatgtgtaaatgttatttaattgtttttgagtaacggggtgttaca 641855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5188110 - 5188161
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||| ||||||||||||||||||    
T  5188110 ttactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 5188161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15630831 - 15630779
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  15630831 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 15630779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33404100 - 33404048
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| ||| ||| | ||||||||||||||||||| |||||||    
T  33404100 ttactctgatatataaatgttatttaattgtttttgggtaacgggatgttaca 33404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37284564 - 37284512
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  37284564 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 37284512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 52399601 - 52399550
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  52399601 tactctgatgtttatatgctattttattgtttttgggtaacggggtgttaca 52399550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 24065623 - 24065570
Alignment:
Q  3 actctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  24065623 actctgatgtttatatgctattttattgcttttgggtaacggggtgttacagaa 24065570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33684979 - 33685031
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  33684979 ttactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 33685031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 26739884 - 26739935
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  26739884 tactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 26739935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6739871 - 6739818
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||||||||    
T  6739871 ttactctgatgtatatttgctatttaattgcttttgggtaacggggtgttacag 6739818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18417479 - 18417427
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  18417479 ttactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 18417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24423354 - 24423302
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | |||||||||||||||||||||||||||    
T  24423354 ttactctgatgtataaatgttatttaattgtttttgggtaacggggtgttaca 24423302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38908875 - 38908927
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  38908875 ttactctgatgtatataagctattttatttgttttgggtaacggggtgttaca 38908927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38911723 - 38911775
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  38911723 ttactctgatgtatataagctattttatttgttttgggtaacggggtgttaca 38911775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39093622 - 39093570
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| |||||| |||||||||||| |||||||||    
T  39093622 ttactctgatgtttatatgctattttattgcttttgggtaacgaggtgttaca 39093570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3653462 - 3653513
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  3653462 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 3653513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 11385295 - 11385244
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  11385295 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 11385244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 39190472 - 39190523
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  39190472 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 39190523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 48427213 - 48427162
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  48427213 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 48427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 31564777 - 31564830
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||||    
T  31564777 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttacaga 31564830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20278027 - 20278079
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| |||||| |||||||||||||||    
T  20278027 ttactctgatgtatatttgctatttaattgcttttggttaacggggtgttaca 20278079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41051042 - 41050991
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  41051042 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 41050991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 31536060 - 31536111
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  31536060 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttaca 31536111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17145628 - 17145576
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||  || ||| | ||||||||||||||||||| |||||||    
T  17145628 ttactctgatgtataattgttatttaattgtttttgggtaacgggatgttaca 17145576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17378771 - 17378720
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||| ||||||||||||||||||    
T  17378771 ttactctgatgtttatatgttattttattgcttt-gggtaacggggtgttaca 17378720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29152135 - 29152187
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  29152135 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 29152187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 53572103 - 53572156
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  53572103 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttacag 53572156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 51848500 - 51848448
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  51848500 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 51848448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 3107774 - 3107721
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    ||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||    
T  3107774 tactctgatgtttatacgctattttattgcttttgggtaacggggtgttacaga 3107721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21351554 - 21351501
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||||||| |||||| |||||||||||||| ||||||||    
T  21351554 ttactctgatgtttatatgctattttattgcttttgggtaacgggatgttacag 21351501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28752075 - 28752023
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||||||||| | |||| |||||||||||||||||||||||    
T  28752075 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttacag 28752023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29492829 - 29492777
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  29492829 ttactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 29492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50656842 - 50656894
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  50656842 ttactctgatgtatttatgctattttattgctttcgggtaacggggtgttaca 50656894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 51854586 - 51854638
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  51854586 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 51854638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3783595 - 3783646
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  3783595 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 3783646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 17596083 - 17596032
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||| |||||||| |||||||||||||    
T  17596083 tactctgatgtttatatgctattttattgcttttgggtgacggggtgttaca 17596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 28758242 - 28758191
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  28758242 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 28758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21152273 - 21152324
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  21152273 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 21152324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23866598 - 23866649
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  23866598 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 23866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 45611000 - 45610949
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||| ||||||||||||||||    
T  45611000 tactctgatgtatatttgctatttaattgcttttgagtaacggggtgttaca 45610949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 54518791 - 54518740
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  54518791 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttaca 54518740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3554512 - 3554564
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||| ||| |||||| ||| |||||||||||||||||||    
T  3554512 ttactctgatgtttatatgttattttattgcttt-gggtaacggggtgttacag 3554564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54833999 - 54834051
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||  || ||| | |||| ||||||||||||||||||||||    
T  54833999 ttactctgatgtataattgttatttaattgcttttgggtaacggggtgttaca 54834051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20964186 - 20964133
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  20964186 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttacag 20964133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30197348 - 30197401
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  30197348 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttacag 30197401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35584670 - 35584617
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  35584670 ttactctgatgtatttatgctattttattgcttttgggtaacggggtgttacag 35584617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4072363 - 4072415
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  4072363 tactctgatgtttatatgctattttattgcttttgggtaacggggtgttacag 4072415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40584837 - 40584783
Alignment:
Q  1 ttactctgatgtatatat--gctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  40584837 ttactctgatgtatatatatgctatgttattgtttttgggtaacagggtgttaca 40584783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1061013 - 1060960
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||| |||||| ||| |||||| |||||||||||||||||||||||    
T  1061013 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttacag 1060960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1066396 - 1066344
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  1066396 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 1066344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 4076773 - 4076722
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  4076773 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 4076722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11361075 - 11361126
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  11361075 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 11361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 28926813 - 28926762
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  28926813 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 28926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 42552516 - 42552465
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42552516 tactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 42552465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 29065829 - 29065776
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||||    
T  29065829 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttacaga 29065776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 36985363 - 36985414
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| | |||||||| | |||| ||||||||||||||||||||||    
T  36985363 tactctgatgtttgtatgctatttaattgcttttgggtaacggggtgttaca 36985414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 44091865 - 44091916
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  44091865 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttaca 44091916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27728863 - 27728814
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgtta 51  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||    
T  27728863 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgtta 27728814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 72243 - 72293
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| ||  |||||||||||||||||||||    
T  72243 ttactctgatgtatttatgctattttactg--tttgggtaacggggtgttaca 72293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21121384 - 21121331
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||||||| ||| ||| | |||| ||||| |||||||||||||||||    
T  21121384 ttactctgatgtataaatgttatttaattgcttttgagtaacggggtgttacag 21121331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21604124 - 21604071
Alignment:
Q  1 ttactctgatgtatatatgctatgttattg-tttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| |||| ||||||||||||||||||    
T  21604124 ttactctgatgtttatatgttattttattgcttttggggtaacggggtgttaca 21604071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23832665 - 23832717
Alignment:
Q  1 ttactctgatgtatatatgctatgtt-attgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  23832665 ttactctgatgtatttatgctatatttattgtttt-gggtaacggggtgttaca 23832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36593708 - 36593656
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttggg-taacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||||||||||| |||||||||||||||    
T  36593708 ttactctgatgtatat-tgctatttaattgtttttggggtaacggggtgttaca 36593656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33406 - 33354
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  33406 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 33354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49314 - 49262
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  49314 ttactctgatgtatttatgctattttattgcttttgggtaacggggtgttaca 49262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14765112 - 14765060
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  14765112 ttactctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14765060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4979684 - 4979630
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacaga 55  Q
    |||||||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  4979684 ttactctgatgtatatattctattttattgcttttgggtaacgaggtgttacaga 4979630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14562963 - 14562913
Alignment:
Q  3 actctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  14562963 actctgatgtttatatgctattttattgcttttgggtaacggggtgttaca 14562913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35033200 - 35033147
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||| |||||||| ||| || |||||||||||||||||||||||    
T  35033200 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttacag 35033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13362730 - 13362782
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  13362730 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 13362782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28980050 - 28979998
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||||||||| |||||  |||||||||||||||||||||||    
T  28980050 tactctgatgtttatatgctattttattacttttgggtaacggggtgttacag 28979998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33799180 - 33799232
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||||||| |||||| | |||| |||||||||||||||||||||||    
T  33799180 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttacag 33799232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 28985270 - 28985219
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  28985270 tactctgatgtttatatgctattttattacttttgggtaacggggtgttaca 28985219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 37879195 - 37879144
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  37879195 tactctgatgtttatatgctattttatttcttttgggtaacggggtgttaca 37879144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 213350 - 213296
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  213350 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 213296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 238904 - 238958
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  238904 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 238958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 726973 - 726919
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  726973 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 726919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 752642 - 752696
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  752642 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 752696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 792259 - 792313
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  792259 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 792313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 799474 - 799420
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  799474 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 799420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 850867 - 850813
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacagaa 56  Q
    ||||||||||| |||||| | | |||||| |||||||||||||||||||||||||    
T  850867 tactctgatgtttatatgttgttttattgcttttgggtaacggggtgttacagaa 850813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10949508 - 10949560
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| | |||| | |||||||||||||||||||||||||||    
T  10949508 ttactctgatgaatatttactatttaattgtttttgggtaacggggtgttaca 10949560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10957513 - 10957565
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| | |||| | |||||||||||||||||||||||||||    
T  10957513 ttactctgatgaatatttactatttaattgtttttgggtaacggggtgttaca 10957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16888074 - 16888126
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||| | | |||| ||||||||||||||||||||||    
T  16888074 ttactctgatgtatatttgctttttaattgcttttgggtaacggggtgttaca 16888126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33828691 - 33828640
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  33828691 ttactctgatgtatttatgctattttactgtttt-gggtaacggggtgttaca 33828640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35540402 - 35540351
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  35540402 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 35540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36801214 - 36801265
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| ||||||  |||||||||||||||||||||    
T  36801214 ttactctgatgtttatatgctattttattg-ctttgggtaacggggtgttaca 36801265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 37235097 - 37235046
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||| ||||||||||    
T  37235097 tactctgatgtatatttgctatttaattgcttttgggtaacagggtgttaca 37235046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4521548 - 4521600
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||| ||| ||| || || |||||||||||||||||||    
T  4521548 ttactctgatgtatttatgttattttactgcttatgggtaacggggtgttaca 4521600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 14737602 - 14737650
Alignment:
Q  5 tctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||| |||| |||||| | |||| ||||||||||||||||||||||    
T  14737602 tctgatgaatatttgctatttaattgcttttgggtaacggggtgttaca 14737650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23225521 - 23225573
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||  || ||| | |||| ||||||||||||||||||||||    
T  23225521 ttactctgatgtataattgttatttaattgcttttgggtaacggggtgttaca 23225573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27910362 - 27910414
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||  || || |||| |||||| ||||||||||||||||||||||    
T  27910362 ttactctgatgattacatactattttattgcttttgggtaacggggtgttaca 27910414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27956781 - 27956833
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||  || || |||| |||||| ||||||||||||||||||||||    
T  27956781 ttactctgatgattacatactattttattgcttttgggtaacggggtgttaca 27956833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41242933 - 41242985
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||| | ||| ||| | |||| ||||||||||||||||||||||    
T  41242933 ttactctgatgtaaaaatgttatttaattgcttttgggtaacggggtgttaca 41242985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30780371 - 30780319
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  30780371 ttactctgatgtatatatgctatttaattgcttttgggtaacggggtgttaca 30780319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11994447 - 11994395
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  11994447 ttactctgatgtttatatgttattttattgcttttgggtaacggggtgttaca 11994395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14615748 - 14615800
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  14615748 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 14615800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22249031 - 22249083
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  22249031 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 22249083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37540821 - 37540873
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  37540821 ttactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 37540873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37548365 - 37548417
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  37548365 ttactctgatgtttatatgctatttaattgcttttgggtaacggggtgttaca 37548417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 5583085 - 5583136
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  5583085 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 5583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 14883151 - 14883202
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  14883151 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 14883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 14889828 - 14889879
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  14889828 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 14889879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 18895802 - 18895853
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  18895802 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 18895853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24795851 - 24795902
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  24795851 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 24795902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24801218 - 24801269
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  24801218 tactctgatgtttatatgctattttattccttttgggtaacggggtgttaca 24801269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 40011779 - 40011830
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  40011779 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 40011830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 7508851 - 7508902
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||||||||| |||||  |||||||||||||||||||||||    
T  7508851 tactctgatgt-tatatgctattttatttcttttgggtaacggggtgttacag 7508902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17939726 - 17939778
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || || |||||||||||||||||||    
T  17939726 ttactctgatgtatttatgctattttactgcttatgggtaacggggtgttaca 17939778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25845647 - 25845595
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||    
T  25845647 ttactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 25845595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25852282 - 25852230
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||    
T  25852282 ttactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 25852230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43028343 - 43028292
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  43028343 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 43028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 41879526 - 41879577
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  41879526 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttaca 41879577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20339898 - 20339845
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    ||||||||||| |||| || ||| | |||| |||||||||||||||||||||||    
T  20339898 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttacag 20339845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20346492 - 20346440
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  20346492 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 20346440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 435 - 487
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  435 ttactctgatgtatttatgctattttactgcttttgggtaacggggtgttaca 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 8587 - 8536
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||||||    
T  8587 tactctgatgtttatatgctattaaattgtttttgggtaacggggtgttaca 8536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 31106 - 31157
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  31106 tactctgatgtatatttgctatttaattgcttttgggtaacggggtgttaca 31157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13035 - 13085
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgtta 51  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||    
T  13035 ttactctgatgtatatttgctatttaattgcttttgggtaacggggtgtta 13085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19329 - 19382
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttacag 54  Q
    |||||||||||||||| |||||| | |||| ||||| |||||||||||||||||    
T  19329 ttactctgatgtatatttgctatttaattgcttttgagtaacggggtgttacag 19382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2150
Description:

Target: scaffold2150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 910 - 859
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  910 ttactctgatgtatat-tgctatttaattgcttttgggtaacggggtgttaca 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16818 - 16870
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||| |||||| ||| ||| | |||||||||||||||||||||||||||    
T  16818 ttactctgttgtataaatgttatttaattgtttttgggtaacggggtgttaca 16870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 64002 - 63950
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||    
T  64002 ttactctgatgtataaatgttatttaattgcttttgggtaacggggtgttaca 63950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 19218 - 19269
Alignment:
Q  2 tactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    |||||||||| |||| || ||| | |||||||||||||||||||||||||||    
T  19218 tactctgatgaatatttgttatataattgtttttgggtaacggggtgttaca 19269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10941 - 10995
Alignment:
Q  1 ttactctgatgtatatatgctatgttattg-tttttgggtaacggggtgttacag 54  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||||    
T  10941 ttactctgatgtataaatgttatttaattgatttttgggtaacggggtgttacag 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10559 - 10507
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  10559 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 10507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12994 - 13046
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  12994 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 13046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31235 - 31183
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggggtgttaca 53  Q
    ||||||||||| |||| || ||| | |||| ||||||||||||||||||||||    
T  31235 ttactctgatgaatatttgttatttaattgcttttgggtaacggggtgttaca 31183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33490 - 33534
Alignment:
Q  1 ttactctgatgtatatatgctatgttattgtttttgggtaacggg 45  Q
    ||||||||||||||| ||| ||| | |||||||||||||||||||    
T  33490 ttactctgatgtataaatgttatttaattgtttttgggtaacggg 33534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University