View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_8 (Length: 407)
Name: NF11547_low_8
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 32032262 - 32031876
Alignment:
| Q |
1 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagc |
100 |
Q |
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| T |
32032262 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagc |
32032163 |
T |
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| Q |
101 |
ttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagt |
200 |
Q |
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| T |
32032162 |
ttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagt |
32032063 |
T |
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| Q |
201 |
tatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctcat |
300 |
Q |
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| T |
32032062 |
tatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctcat |
32031963 |
T |
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| Q |
301 |
gtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattact |
387 |
Q |
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| T |
32031962 |
gtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattacatttattact |
32031876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 32065423 - 32065032
Alignment:
| Q |
1 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaa---------------------gacc |
79 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
32065423 |
acaactttattgcattctaaaacaactagtaggaaataacaaaattaaattgatacaattaaaatacaataccaaaaaaaaaaaaaaaaataccaagacc |
32065324 |
T |
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| Q |
80 |
ttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcat |
179 |
Q |
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|||||| || |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||||| ||| ||||||| ||||||||||||| |
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| T |
32065323 |
ttcccatggaaaaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcat |
32065224 |
T |
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| Q |
180 |
aagctttccaacaccttgagttatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatc |
279 |
Q |
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||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
32065223 |
aagctatccaacaccttgattcatccttatggtagaaatacccaacacacttacaatcattggtacatttgtttccacatgcatcttcacttactatatc |
32065124 |
T |
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| Q |
280 |
accagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttag |
371 |
Q |
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|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065123 |
accactagtgtatttgttcatgtaatgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttag |
32065032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 32072458 - 32072371
Alignment:
| Q |
268 |
acttacactatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatact |
355 |
Q |
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|||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaactcacttgctttgcatact |
32072371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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