View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_9 (Length: 395)
Name: NF11547_low_9
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 7105143 - 7105523
Alignment:
| Q |
15 |
gacatcactcctcgttgttgtagctgcgaaagaatgaaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaattttt |
114 |
Q |
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| T |
7105143 |
gacagcactcctcgttgttgtagctgcgaaagaatggaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaattttt |
7105242 |
T |
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| Q |
115 |
gtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtct |
214 |
Q |
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| T |
7105243 |
gtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtct |
7105342 |
T |
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| Q |
215 |
tgagtgtctagactcggcaattatggacagtcatgaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatcaaagtggagccg |
314 |
Q |
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| T |
7105343 |
tgagtgtctagactcggcaattatggacagtcatgaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatcaaagtggagccg |
7105442 |
T |
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| Q |
315 |
caagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggagaaaagaatgtatgtgttaatgtgtta |
395 |
Q |
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| T |
7105443 |
caagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggagaaaagaatgtatgtgttaatgtgtta |
7105523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 7092916 - 7093294
Alignment:
| Q |
15 |
gacatcactcctcgttgttgtagctgcgaaagaatgaaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaattttt |
114 |
Q |
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| T |
7092916 |
gacagcactcctcgttgttgtagctgcgaaagaatggaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaattttt |
7093015 |
T |
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| Q |
115 |
gtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtct |
214 |
Q |
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| T |
7093016 |
gtcttttcctattatttattctaatttatggaactttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtct |
7093115 |
T |
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| Q |
215 |
tgagtgtctagactcggcaattatggacagtcatgaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatcaaagtggagccg |
314 |
Q |
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| T |
7093116 |
tgagtgtctagactcggcaattatggacagtcatgaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatgaaagtggagcag |
7093215 |
T |
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| Q |
315 |
caagttcctatacttttggtggaaagacaaacaataaaagaggccatagagggagaaaagaatgtatgtgttaatgtgtta |
395 |
Q |
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| T |
7093216 |
caagttcctatgcttttggtggaaagacaagcactaaatgaggccatggagggagaaaagaatg--tgtgttaatgtgtta |
7093294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 7107448 - 7107494
Alignment:
| Q |
216 |
gagtgtctagactcggcaattatggacagtcatgaatgccaacctct |
262 |
Q |
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| T |
7107448 |
gagtgtctaggctgagcaattatggacagtcatgaatgccaacctct |
7107494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 149 - 380
Target Start/End: Complemental strand, 33407268 - 33407037
Alignment:
| Q |
149 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcgaaagctatgtcttgagtgtctagactcggcaattatggacagtcat |
248 |
Q |
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| T |
33407268 |
tttccaatcagtgcagtcaacggacacaaagtatctgttgcttgatgacggtcgaaagctgtgtcttgagtgtctcgattcggctattatggatactcat |
33407169 |
T |
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| Q |
249 |
gaatgccaacctctctaccatgaaatactagaattttatgaaggtttaaatatcaaagtggagccgcaagttcctatacttttggtggaaagacaaacaa |
348 |
Q |
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||||||||||||||||| | |||||||| |||||||||||||||||| |||| ||| | |||| |||| ||||||| |||||||| || |||||| || |
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| T |
33407168 |
gaatgccaacctctctatcttgaaatacaagaattttatgaaggtttgcatatgaaaatagagcagcaaattcctatgcttttggttgagagacaagcac |
33407069 |
T |
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| Q |
349 |
taaaagaggccatagagggagaaaagaatgta |
380 |
Q |
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| T |
33407068 |
tgaatgaagcgatggagggcgaaaagaatgta |
33407037 |
T |
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