View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11548_high_2 (Length: 525)
Name: NF11548_high_2
Description: NF11548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11548_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 47215141 - 47215649
Alignment:
| Q |
1 |
ttagtggggataaagatgcaactacaagaagcaataacgaacttgactgttttccgagaacaaataaaataaataagtaataatgatatcacctttgtgt |
100 |
Q |
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| T |
47215141 |
ttagtggggataaagatgcaactacaagaagcaataatgaacttgactgttttccgagaacaaataaaataaataagtaataatgatatcacctttgtgt |
47215240 |
T |
|
| Q |
101 |
catcagagtcgttcaacacatatgttaatcttttttcctttcgagggcgagttgaattgtttgcgttgcccgtactagccacgcggtgcattgcggaaac |
200 |
Q |
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| T |
47215241 |
catcagagtcgttcaacacatatgttaatcttttttcctttcgagggcgagttgaattgtttgcgttgcccgtactagccacgcggtgcattgcggaaac |
47215340 |
T |
|
| Q |
201 |
tataaaagtcataaattacatagataaataatattcccacgaataaattaaagaaaataatcccaaataaggaattccacttcagaacattttcaacggt |
300 |
Q |
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| T |
47215341 |
tataaaagtcataaattacatagataaataatattcccacgaataaattaaagaaaataatcccaaataaggaattccacttcagaacattttcaactgt |
47215440 |
T |
|
| Q |
301 |
atnnnnnnntcatttggaaaataaaacttcagg-gatgtaatttacgaaataagaccaactacttaaaagaaagtaagtgcacagttcaatagccggatt |
399 |
Q |
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| T |
47215441 |
ataaaaaaatcatttggaaaataaaacttcaggcgatgtaatttacgaaataagaccaactacttaaaagaaagtaagtgcacagttcaatagccggatt |
47215540 |
T |
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| Q |
400 |
ccaatagaccgtttggttgaaagattactcttcaaccttgtggtacttggttcgaaaccaggcaccaacaaagtacacagttcaatagaactctctgaag |
499 |
Q |
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| T |
47215541 |
ccaatagaccgtttggttgaaagattactcttcaaccttgtggtacttggttcgaaaccaggcaccaacaaagtacacggttcaatagaactctctgaag |
47215640 |
T |
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| Q |
500 |
ggcacagtt |
508 |
Q |
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| T |
47215641 |
ggcacagtt |
47215649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 36424016 - 36423949
Alignment:
| Q |
91 |
acctttgtgtcatcagagtcgttcaacacatatgttaatcttttttcctttcgagggcgagttgaatt |
158 |
Q |
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| T |
36424016 |
acctttgtgtcatcagcatcattcaacacatatgtcaacctcttctccttacgcgggcgagttgaatt |
36423949 |
T |
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