View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11548_low_1 (Length: 669)
Name: NF11548_low_1
Description: NF11548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11548_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Original strand, 42407919 - 42408582
Alignment:
| Q |
1 |
atacttcaactcaaagtattgtattcggagagaagtaggaatatacaatttcaaaatcttaatttggaacaataactttctctttacaatttcttcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42407919 |
atacttcaactcaaagtattgtattcggagagaagtaggaatatacaatttcaaaatcttaatttggaacaataactttctctttacaatttcttcaaaa |
42408018 |
T |
|
| Q |
101 |
agaatttgagaaaaataattacatttccaaataaattattttcccacatgattatttgcttcatccaagatcaggcacggtgaagtactcatcttcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408019 |
agaatttgagaaaaataattacatttccaaataaattattttcccacatgattatttgcttcatccaagatcaggcacggtgaagtactcatcttcatca |
42408118 |
T |
|
| Q |
201 |
tcataatcataatcacgtatcagttcaattctaggctttttgttagacatatgtgacttggagtttctgtatgatgaataattgttgcttgcatgagtta |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408119 |
tcataatcataatcacgtatgagttcaattctaggctttttgttagacatatgtgacttggagtttctgtatgatgaataattgttgcttgcatgagtta |
42408218 |
T |
|
| Q |
301 |
ctggaagctgaggaacttcagctgcagccatggcttcttgagtgaagtcatcaccaaaaagaccctcctctgtgaaccattccatctctccaaactgcat |
400 |
Q |
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| T |
42408219 |
ctggaagctgaggaacttcagctgcagccatggcttcttgagtgaagtcatcaccaaaaagaccctcctctgtgaaccattccatctctccaaactgcat |
42408318 |
T |
|
| Q |
401 |
ggaatccttctgaagcacaataagnnnnnnngaagttaaaaattgagttaattaaatatgtttagttac--------tgcattttttgtatttaatcatg |
492 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
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| T |
42408319 |
ggaatccttctgaagcacaataagaaaaaaagaagttaaaaattgagttaattaaatatgtttagttactaaaaatttacatttcttgtatttaatcatg |
42408418 |
T |
|
| Q |
493 |
taccattagataataggttattgaaccttttgttataattgagctaagagtagtttagtctctctgta--tttactatatatcctgagtaacatttgtgt |
590 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||| ||||| || | |||| | |
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| T |
42408419 |
taccatttgataataggttattgaaccttttgttataattgagctaagggtagtttagtctctttatatttttactttatattctta-------ttgtat |
42408511 |
T |
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| Q |
591 |
tttgaacttttgccattctaatgaaaccctagttgtctttgttgttttgttctctattctctctgcttctc |
661 |
Q |
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|||||||||||| | |||||| |||| |||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
42408512 |
tttgaacttttgtcgatctaataaaactctagctgtctttgttgttttgttctctcttctctctgattctc |
42408582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 5265167 - 5265131
Alignment:
| Q |
507 |
aggttattgaaccttttgttataattgagctaagagt |
543 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
5265167 |
aggttattgagccttttgttataattgagctaagagt |
5265131 |
T |
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