View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11548_low_3 (Length: 404)
Name: NF11548_low_3
Description: NF11548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11548_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 9290018 - 9290393
Alignment:
| Q |
1 |
actcttattgactcgcatacatcaacaggacacatcatctgacatccatattacaggatagacttttgatacaaagagtcggttacctttagtcaaacct |
100 |
Q |
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| T |
9290018 |
actctcattgactcgcatacatcaacaggacacatcatctgacatccatattacaggatagacttttgatacaaagagtaggttacctttagtcaaaccc |
9290117 |
T |
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| Q |
101 |
gactctaatgcgactcttaggtcatgaagggagtctaaaacaccatagagatcttcaaattggattaagagcaaaaacacaaatgatttggacaccctat |
200 |
Q |
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| T |
9290118 |
gactctaatgcgactcttaggtcatgaagggagtctaaaacacgatagagatcttcacattggattaagagcaaaaacacaaatga-------------- |
9290203 |
T |
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| Q |
201 |
gatttggacaaccaaaggtgaacattgacaggtgggtacttgactgttctactggaaactatctttgacctgtttgaaattatattttatccataacatt |
300 |
Q |
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| T |
9290204 |
--tttggacaaccaaaggtggacattgacaggtgggtacttgactgttctactggaaactatctttgacctgtttgaaattatattttatccataacatt |
9290301 |
T |
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| Q |
301 |
aggaagtaatccttatctttttcttctcaataatgttgataagattgttctgagaaactagacaccttacattgaataaagaactggctctc |
392 |
Q |
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| T |
9290302 |
aggaagtaatccttatctttttcttctcaataatgttgataagattgttctgagaaactagacaccttacattgaataaagaactggctctc |
9290393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 9294505 - 9294683
Alignment:
| Q |
20 |
catcaacaggacacatcatctgacatccatattacaggatagacttttgatacaaagagtcggttacctttagtcaaacctgactctaatgcgactctta |
119 |
Q |
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| T |
9294505 |
catcaacaggacacatcaaca-acatccatataaccagatagacatttgatacaa-gagtcggttacctttagtcaaacctgactctaatacgactctta |
9294602 |
T |
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| Q |
120 |
ggtcatgaagggagtctaaaacaccatagagatcttcaaattggattaagagcaaaaacacaaatgatttggacaccctat |
200 |
Q |
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| T |
9294603 |
ggtcatgaagggagtctaaaacaccacagagattttcacattgaattaagagcgaaaacacaagtgatttgaacgccctat |
9294683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 365
Target Start/End: Original strand, 9294736 - 9294861
Alignment:
| Q |
240 |
ttgactgttctactggaaactatctttgacctgtttgaaattatattttatccataacattaggaagtaatccttatctttttcttctcaataatgttga |
339 |
Q |
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| T |
9294736 |
ttgactgttctattgctaagtttctttgacctgttttaaattatattttatgcataacgctaggaagtaatctttatattttgcttgtcaataatgttga |
9294835 |
T |
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| Q |
340 |
taagattgttctgagaaactagacac |
365 |
Q |
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| T |
9294836 |
taagattgttcagaaaaagtagacac |
9294861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 9333941 - 9333881
Alignment:
| Q |
113 |
actcttaggtcatgaagggagtctaaaacaccatagagatcttcaaattggattaagagca |
173 |
Q |
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| T |
9333941 |
actcttaggtcattaaaggagtctaaaacaccacaaagatattcaaattgtattaagagca |
9333881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 9307408 - 9307310
Alignment:
| Q |
72 |
caaagagtcggttacctttagtcaaacctgactctaatgcgactcttaggtcatgaagggagtctaaaacaccatagagatcttcaaattggattaaga |
170 |
Q |
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| T |
9307408 |
caaagagtcggtcaccttcagtcaatctaggctttgatgcaactcttaagtcattaaaggagtctaaaacacaacaaagatcttcaaattgaattaaga |
9307310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 51532513 - 51532436
Alignment:
| Q |
323 |
cttctcaataatgttgataagattgttctgagaaactagacaccttacattgaataaagaactggctctctgcttctc |
400 |
Q |
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| T |
51532513 |
cttctcaataatgttgataagattgttctgagaaagtagaccccttaaaaagaataaagaagtggttctatgtttctc |
51532436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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