View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_1 (Length: 575)
Name: NF11549_high_1
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 49700224 - 49699680
Alignment:
| Q |
18 |
ctgatatatcacaaatccaaaaagaaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtg |
117 |
Q |
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| T |
49700224 |
ctgatatatcacaaatccaaaaagaaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtg |
49700125 |
T |
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| Q |
118 |
catagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaaggtttaaaaaggattgtactcacatattgcctagttctgct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49700124 |
catagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaaggtttaaaaaagattgtactcacatattgcctagttctgct |
49700025 |
T |
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| Q |
218 |
tgtggcatgaacagctaaatttgtcatgtttccaatgatgtatgcagtaagtccctgattaaagagtatatagaaaatgtcaaatagcatctcccttgta |
317 |
Q |
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| T |
49700024 |
tgtggcatgaacagctagatttgtcatgtttccaatgatgtatgcagtaagtccctgattaaagagtataaagaaaatgtcaaatagcatctcccttgta |
49699925 |
T |
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| Q |
318 |
tttacaggatgcagatcaccataaccaactgctgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttcttgtcaaccg |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49699924 |
tttacaggatgcagatcaccataaccaactgttgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttcttgtcaaccg |
49699825 |
T |
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| Q |
418 |
catcaggaacaagcccaagccacgttgtgctcaggtctttagcataatggtcggcaagaaagtagaaaatgcaggctccattatgtactacaaatagagt |
517 |
Q |
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| T |
49699824 |
catcaggaacaagcccaagccacgttgtgcttaggtctttagcataatggtcggcaagaaagtagaaaatgcaggctccattatgtactacaaatagagt |
49699725 |
T |
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| Q |
518 |
aacctacagtgtaaacacaagacaatgcttgttataaacttattc |
562 |
Q |
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| T |
49699724 |
aacctacagtgtaaacacaagacaatgcttgttataaactcattc |
49699680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 2243335 - 2243404
Alignment:
| Q |
285 |
atatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgctgaaa |
354 |
Q |
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| T |
2243335 |
atataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaa |
2243404 |
T |
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