View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_12 (Length: 349)
Name: NF11549_high_12
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 41926739 - 41927059
Alignment:
| Q |
13 |
cagagagttgaaaactatacattctaattgactaggtatttcattctttcaaaactctggagcctcaccagttctctgcttgccgtgacctatatacttt |
112 |
Q |
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| T |
41926739 |
cagagagttgaaaactatacattctaattgactaggtatttcattctttcaaaactctggagcctcaccggttctctgcttgcagtgacctatgtacttt |
41926838 |
T |
|
| Q |
113 |
tgcttgcaccgtacaaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggaactcttgtttaaacaagtgttatttgctgcctt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41926839 |
tgcttgcaccgtacaaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggagctcttgtttaaacaagtgttatttgctgcctt |
41926938 |
T |
|
| Q |
213 |
agacatcttagtttaactggttccgcatcatggaagatttatcttctgttcctttcttgtttgctcaaaatgcatgtcagttgagttgcatagattcttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41926939 |
agacatcttagtttaactggttccgcatcatggaagatttatcttctgttcctttcttgtttgctcaaaatgcatgtcagttgagttgcatagattcttt |
41927038 |
T |
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| Q |
313 |
gtacttaatttcacaaaatac |
333 |
Q |
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||||||||||||||||||||| |
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| T |
41927039 |
gtacttaatttcacaaaatac |
41927059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 36122541 - 36122229
Alignment:
| Q |
16 |
agagttgaaaactatacattctaattgactaggtatttcattctttcaaaactctggagcct-caccagttctctgcttgccgtgacctatatacttttg |
114 |
Q |
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||||| |||||||||||||||||||| || || ||||| | ||| ||||| |||||||| | | || || || || |||| |||||||||| | | ||| |
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| T |
36122541 |
agagtcgaaaactatacattctaattaaccagctattttaaacttccaaaattctggagctttctcctgtcctttgtttgcagtgacctataaattattg |
36122442 |
T |
|
| Q |
115 |
cttgcaccgtacaaaatgaagcttgtgcctgtctttaaactatatataggcagttctccttgggaactcttgtttaaacaagtgttatttgctgccttag |
214 |
Q |
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||| |||||||| ||||| | ||||| ||||||||||||||||||||| | ||||| |||| ||||| |||||||||||||||||| ||||||||| |
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| T |
36122441 |
cttatcccgtacaagatgaaacccgtgcccgtctttaaactatatataggccgaactcctggggagctcttatttaaacaagtgttattttctgccttag |
36122342 |
T |
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| Q |
215 |
aca--tcttagtttaactggttccgcatcatggaagatttatcttctgttcctttcttgtttgctcaaaatgcatgtcagttgagttgcatagattcttt |
312 |
Q |
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||| |||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
36122341 |
acacatcttcatttaactggttcctcatcatggaagatttatcttctcttccttttttgtttgctcaaaatgtatgccagttaagttgcatagactcttt |
36122242 |
T |
|
| Q |
313 |
gtacttaatttca |
325 |
Q |
| |
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|| |||||||||| |
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| T |
36122241 |
gtgcttaatttca |
36122229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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