View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_15 (Length: 345)
Name: NF11549_high_15
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 35500612 - 35500268
Alignment:
| Q |
1 |
tatataatcttctgagttttaacgagtacagttcgtaacagcttgcagctggttaaagaaaaccttccttatccaaattggacttggaatagtaatgtgg |
100 |
Q |
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| T |
35500612 |
tatataatcttctgagttttaatgagtacagttcgtaacagcttgcagctggttaaagaaaaccttccttatccaaattggacttggaacagtaatgtgg |
35500513 |
T |
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| Q |
101 |
gctgtggttaatttgggtttgcattttttatggtctaatattattcatatgatctcagaaagattcgttgatggagataagtttccatataccgaattcc |
200 |
Q |
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| T |
35500512 |
gctgtggttaatttgggtttgcattttttatggtctaatattattcatatgatctcagaaagattcgttgatggagataagtttccatataccgaattcc |
35500413 |
T |
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| Q |
201 |
aacacccagtttgttggtgatgaaaattgcccccctgctcaggtgagtctgttcacgaggttaataaatttcatggtaataaattatatgtaacctaagt |
300 |
Q |
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| T |
35500412 |
aacacccagtttgttggtgatgaaaattgcccccctgctcaggtgagtttgttcacgaggttaataaatttcatgttaataaattatatgtaacctaagt |
35500313 |
T |
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| Q |
301 |
ttggataatatttttcgtatcaggttttccgtgataaaataatat |
345 |
Q |
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| T |
35500312 |
ttgcataatatttttcgtatcaggttttccgtgataaaataatat |
35500268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 7071034 - 7071268
Alignment:
| Q |
27 |
tacagttcgtaacagcttgcagctggtta-aagaaaaccttccttatccaaa-ttggacttggaatagtaatgtgggctgtggttaat---------ttg |
115 |
Q |
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||||||| | |||| |||||||||||||| |||||||||||||| ||||||| |||| |||| ||||||| ||| ||||| |||||| ||| |
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| T |
7071034 |
tacagtttggaacaacttgcagctggttagaagaaaaccttcctcatccaaacttgggcttg-aatagtattgtaggctgcagttaataggctcattttg |
7071132 |
T |
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| Q |
116 |
ggtttgcattttttatggtctaatattattcatat---gatctcagaaagattcgttgatggagataagtttccatataccgaattccaacacccagttt |
212 |
Q |
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| T |
7071133 |
gaattgcgttttttatggtctaatgttgtttattttacgatctcagaaagattctttgatggagatgagtttccatgtaccaagttccaatacccagttt |
7071232 |
T |
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| Q |
213 |
gttggtgatgaaaattgcccccctgctcaggtgagt |
248 |
Q |
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| T |
7071233 |
gttggtgatgaagatcgccctcctgctcaggtgagt |
7071268 |
T |
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