View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_16 (Length: 277)
Name: NF11549_high_16
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 24580221 - 24579954
Alignment:
| Q |
1 |
ttggcttaatgaacaaaggttttatagaagactagtaggtaacatatagttggttcttggaggtggtgtgcatgtg------ttttggaagagatgtgtg |
94 |
Q |
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| T |
24580221 |
ttggcttaatgaacaaaggttttatagaagactagtaggtaacatattgttgattcttggaggtggtatgcatgtgcatatgttttggaagagatgtgtg |
24580122 |
T |
|
| Q |
95 |
catatattagcaaaaagaaatggttggtttagggagaaaaatgcactggcttaccctaggttccaatgaatcgtctattttgtacttcctattaggattt |
194 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24580121 |
catatattagcaaagagaaatggttggtttagggtgaaaaacgcactggcttaccctagattccaatgaatcgtctattttgtacttcctattaggattt |
24580022 |
T |
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| Q |
195 |
aggagttaggggtgcgatgtaattggtcattcgatgcattgatggtgattttgtaggggccaaatatg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
24580021 |
aggagttaggggtgcgatgtaattggtcattcgatgcattgatggtgattttgtgggggtcaaatatg |
24579954 |
T |
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