View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_19 (Length: 237)
Name: NF11549_high_19
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 2708359 - 2708535
Alignment:
| Q |
1 |
accattatagcacacatctccagccttggttcagaaacaaatcctagaaataaatataaaaccatatttgagagtagcatatttagtcttcagcacaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2708359 |
accattatagcacacatctccagccttggttcagaaacaaatcctagaaataaatataagaccatatttgagagtagcatatttagtcttcagcacaaag |
2708458 |
T |
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| Q |
101 |
aatctgcatagtactgtcaggcgactatgtaatatttaacaagtcgagttcgtgagcagtgaggcgagcaccaacaa |
177 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708459 |
aatctgcacagtactgtcaggcaactatgtaatatttaacaagtcgagttcgtgagcagtgaggcgagcaccaacaa |
2708535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 2701837 - 2701900
Alignment:
| Q |
160 |
tgaggcgagcaccaacaagctccccggtcatagcagtcaaattgggttcaatggtgttcatcct |
223 |
Q |
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| T |
2701837 |
tgaggcgagcaccaacaagctccccaaccatagcagtcaaattgggtgcaatggtattcatcct |
2701900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 26715556 - 26715493
Alignment:
| Q |
160 |
tgaggcgagcaccaacaagctccccggtcatagcagtcaaattgggttcaatggtgttcatcct |
223 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
26715556 |
tgagtcgagcaccaacaagctccccaaccatagcagtcaaattgggtgcaatggtgttcatcct |
26715493 |
T |
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