View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_2 (Length: 520)
Name: NF11549_high_2
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 35673808 - 35673321
Alignment:
| Q |
15 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
114 |
Q |
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| T |
35673808 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
35673709 |
T |
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| Q |
115 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
214 |
Q |
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| T |
35673708 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
35673609 |
T |
|
| Q |
215 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673608 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
35673509 |
T |
|
| Q |
315 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673508 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttga |
35673409 |
T |
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| Q |
415 |
tcatgtgaaaggttgaagagtttgagtgactctgactcagccaagttggcgagttttgaagaaactgagtgatcagtgaattgaataa |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
35673408 |
tcatgtgaaaggttgaagagtttgagtgactctgactcagccaagttggcaagttttgaagaaactgagtgatcagtgagttgaataa |
35673321 |
T |
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