View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_4 (Length: 478)
Name: NF11549_high_4
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 2800666 - 2801125
Alignment:
| Q |
1 |
tgtgatcaagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800666 |
tgtgatcaagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttag |
2800765 |
T |
|
| Q |
101 |
gataatttgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800766 |
gataatttgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtt |
2800865 |
T |
|
| Q |
201 |
tatgtttatcgaatttgctaaattttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaa |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2800866 |
tatgtttatcgaatttgctaaattgtattagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaa |
2800965 |
T |
|
| Q |
301 |
ttttatgatattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800966 |
ttttatgatattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaac |
2801065 |
T |
|
| Q |
401 |
tgtttatctcacaaccagtaaccaaataaccactatcagaatgttggaaaggtgcagcct |
460 |
Q |
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| T |
2801066 |
tgtttatgtcacaaccagtaaccaaataaccactataagaatgttggaaaggtgcagcct |
2801125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 1680062 - 1679603
Alignment:
| Q |
1 |
tgtgatcaagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680062 |
tgtgatcaagaatatagtttcacggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttag |
1679963 |
T |
|
| Q |
101 |
gataatttgctctggctagatctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679962 |
gataatttgctctggctagatctgtaacaatagattaaggcctactggttaggaatttagataacatatattaatatgttcaatctgtgtgtattctgtt |
1679863 |
T |
|
| Q |
201 |
tatgtttatcgaatttgctaaattttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaa |
300 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1679862 |
tatgtttatcgaatttgctaaattgtataagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaa |
1679763 |
T |
|
| Q |
301 |
ttttatgatattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679762 |
ttttatgatattctaatgtagcatcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaac |
1679663 |
T |
|
| Q |
401 |
tgtttatctcacaaccagtaaccaaataaccactatcagaatgttggaaaggtgcagcct |
460 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1679662 |
tgtttatatcacaaccagtaaccaaataaccactataagaatgttggaaaggtgcagcct |
1679603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 2802666 - 2802715
Alignment:
| Q |
371 |
catctgtttctacatctagatttcattaactgtttatctcacaaccagta |
420 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
2802666 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
2802715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 1659058 - 1659017
Alignment:
| Q |
234 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
275 |
Q |
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||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
1659058 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
1659017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 2802556 - 2802597
Alignment:
| Q |
234 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
275 |
Q |
| |
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||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
2802556 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
2802597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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