View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_high_6 (Length: 419)
Name: NF11549_high_6
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 31581209 - 31581597
Alignment:
| Q |
1 |
agccggggaaaaactgagattagagtctaaattaagaaggaaagttatcggtaaac-aaaaagaaagagtgagtgtgaaaa-gtgaataaaatggaagtg |
98 |
Q |
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| T |
31581209 |
agccggggaaaaactgagattagagtctaaattaagaaggaaagttatcggtaaacgaaaaagaaagagtgagtgtgaaaaagtgaataaaatgaaagtg |
31581308 |
T |
|
| Q |
99 |
tgaatcgatttggagtttacccaatggttgaccgataatttgagatcttagagtgtgtttttcgtctcaggttcaatgatctctgatgtcagtttcgata |
198 |
Q |
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| T |
31581309 |
taaatcgatt---agtttacctagtggttgaccgataatttgagattttagagtgtgtttttcgtttcaaattcaatgatctctgatgttaatttcgata |
31581405 |
T |
|
| Q |
199 |
gactattttaagtttatttatctcaggttcgatttcctgtgatatcaatttcggtgggctatgttagatttatttatttttgatataaaaacttcaactt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31581406 |
gactattttaagtttatttatctcaggttcgatttcctgtgatatcaattttggtggactatgttagatttatttattttttatataaaaacttcaactt |
31581505 |
T |
|
| Q |
299 |
gaagttctttaattaattttggcagggttttgacgtgccatgtgacaactcagaatagtgagtctttacggtaaactatagtccatatatcattcccttc |
398 |
Q |
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| T |
31581506 |
gaagttctttaattaattttggca-ggttttgacgtgccacgtggcaactcagaatagtgagtct----------ctatagtccatatatcattcccttc |
31581594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 15971265 - 15971225
Alignment:
| Q |
219 |
tctcaggttcgatttcctgtgatatcaatttcggtgggcta |
259 |
Q |
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| T |
15971265 |
tctcaggttcgatttcctctgatgtcaatttcggtgggcta |
15971225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 42193539 - 42193579
Alignment:
| Q |
219 |
tctcaggttcgatttcctgtgatatcaatttcggtgggcta |
259 |
Q |
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| T |
42193539 |
tctcaggttcgatttcctctgatgccaatttcggtgggcta |
42193579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 18875660 - 18875619
Alignment:
| Q |
218 |
atctcaggttcgatttcctgtgatatcaatttcggtgggcta |
259 |
Q |
| |
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| T |
18875660 |
atctcaggttcgattccctctgatgtcaatttcggtgggcta |
18875619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 35173175 - 35173135
Alignment:
| Q |
219 |
tctcaggttcgatttcctgtgatatcaatttcggtgggcta |
259 |
Q |
| |
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||||||||| |||||||| |||| ||||||||||||||||| |
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|
| T |
35173175 |
tctcaggtttgatttcctctgatgtcaatttcggtgggcta |
35173135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 31766745 - 31766781
Alignment:
| Q |
219 |
tctcaggttcgatttcctgtgatatcaatttcggtgg |
255 |
Q |
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|||||||||||||||||| |||| ||||||||||||| |
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| T |
31766745 |
tctcaggttcgatttcctctgatgtcaatttcggtgg |
31766781 |
T |
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