View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11549_high_8 (Length: 392)
Name: NF11549_high_8
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 38483908 - 38483548
Alignment:
| Q |
17 |
catcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactccta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38483908 |
catcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactccta |
38483809 |
T |
|
| Q |
117 |
aacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38483808 |
aacaaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttct |
38483709 |
T |
|
| Q |
217 |
caaaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttccattaccactcctaatctcagcctcaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38483708 |
caaaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttccattaccactcctaatctcagcctcaaa |
38483609 |
T |
|
| Q |
317 |
cttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaag |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38483608 |
cttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaag |
38483548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
219 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
269 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
70 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
169 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
|
|
| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
|
| Q |
170 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
257 |
Q |
| |
|
|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
|
| Q |
258 |
taatttctcca |
268 |
Q |
| |
|
||||||||||| |
|
|
| T |
30118057 |
taatttctcca |
30118047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University