View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_10 (Length: 387)
Name: NF11549_low_10
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 41222850 - 41223205
Alignment:
| Q |
11 |
gaaggtgaaaaagggtctagagaaggaagaagaggttcatcaaatgggtttgaattttgttgagaagttacttcattagtactgtgatgagaattggtga |
110 |
Q |
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| T |
41222850 |
gaaggtgaaaaagggtctagagaaggaagaagaggttcatcaaatgggtttgaattttgttgagaagttacttcattagtactgtgatgagaattggtga |
41222949 |
T |
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| Q |
111 |
aaaaagggaaagagtctgagaaaaatggaaggtctccacttccatcatttgaagagactatttctgaggttgaatgtgtgtggaaagttgtggtgccgaa |
210 |
Q |
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| T |
41222950 |
aaaaagggaaagagtctgagaaaaatggaaggtctccacttccatcatttgaagagactatttctgaggttgaatgtgtgtggaaagttgtggtgccgaa |
41223049 |
T |
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| Q |
211 |
tgaatatagttccgaagacatagaatcgaaaaattctattgaattgaattgaactcctttttaatgtgaatcaatatcctgcctctgcgcacgactgcag |
310 |
Q |
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| T |
41223050 |
tgaatatagttccgaagacatagaatcaaaaaattct-----attgaattgaactcctttttaatgtgaatcagtatccagcctttgcgcacgactgcag |
41223144 |
T |
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| Q |
311 |
agactaattactcgaaccggataggatcacaaagggatcaaatctctccctctgagtatttt |
372 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41223145 |
agactaattcctcgaaccggataggatcacaaa-ggatcaaatctctccctctgagtatttt |
41223205 |
T |
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