View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11549_low_11 (Length: 378)

Name: NF11549_low_11
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11549_low_11
NF11549_low_11
[»] scaffold0618 (2 HSPs)
scaffold0618 (10-226)||(7667-7883)
scaffold0618 (287-366)||(7526-7605)
[»] chr8 (7 HSPs)
chr8 (10-226)||(44092026-44092242)
chr8 (287-366)||(44092306-44092385)
chr8 (5-50)||(17693885-17693930)
chr8 (1-44)||(29617725-29617768)
chr8 (5-43)||(25191338-25191376)
chr8 (1-42)||(8980977-8981018)
chr8 (5-45)||(31013843-31013883)
[»] chr3 (14 HSPs)
chr3 (1-51)||(50194553-50194603)
chr3 (5-53)||(20988029-20988077)
chr3 (5-52)||(43488871-43488918)
chr3 (1-52)||(9319831-9319882)
chr3 (5-52)||(9998234-9998281)
chr3 (5-52)||(10108006-10108053)
chr3 (5-52)||(10232838-10232885)
chr3 (5-55)||(36910929-36910979)
chr3 (1-47)||(43016628-43016674)
chr3 (1-38)||(9688504-9688541)
chr3 (5-46)||(35865207-35865248)
chr3 (5-45)||(45568718-45568758)
chr3 (5-45)||(47895926-47895966)
chr3 (1-48)||(53808132-53808180)
[»] scaffold0445 (1 HSPs)
scaffold0445 (1-46)||(1118-1163)
[»] chr2 (6 HSPs)
chr2 (1-50)||(37416482-37416531)
chr2 (5-52)||(12677570-12677617)
chr2 (6-51)||(29279845-29279890)
chr2 (5-45)||(4098888-4098928)
chr2 (5-49)||(31788237-31788281)
chr2 (5-53)||(43397393-43397441)
[»] chr7 (6 HSPs)
chr7 (5-45)||(8013739-8013779)
chr7 (1-52)||(19296648-19296699)
chr7 (1-44)||(30757089-30757132)
chr7 (4-42)||(19405027-19405065)
chr7 (1-53)||(13797201-13797253)
chr7 (1-41)||(47590095-47590135)
[»] chr5 (7 HSPs)
chr5 (3-51)||(14664145-14664193)
chr5 (5-53)||(24230061-24230109)
chr5 (5-53)||(38597564-38597612)
chr5 (1-52)||(8985207-8985258)
chr5 (5-52)||(13006996-13007043)
chr5 (6-51)||(41630279-41630324)
chr5 (5-53)||(7035994-7036042)
[»] chr4 (7 HSPs)
chr4 (1-45)||(22300640-22300684)
chr4 (5-53)||(26633944-26633992)
chr4 (5-51)||(4143028-4143074)
chr4 (5-51)||(22610973-22611019)
chr4 (5-54)||(21686514-21686563)
chr4 (1-41)||(9643176-9643216)
chr4 (5-45)||(13633909-13633949)
[»] scaffold0127 (1 HSPs)
scaffold0127 (5-52)||(15260-15307)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-51)||(58349-58400)
[»] chr6 (4 HSPs)
chr6 (7-54)||(12170262-12170309)
chr6 (1-52)||(30493303-30493354)
chr6 (5-52)||(33053442-33053489)
chr6 (5-45)||(3913847-3913887)
[»] chr1 (4 HSPs)
chr1 (5-51)||(35484652-35484698)
chr1 (7-48)||(28093503-28093544)
chr1 (5-53)||(7337937-7337985)
chr1 (5-45)||(31983958-31983998)


Alignment Details
Target: scaffold0618 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 7883 - 7667
Alignment:
Q  10 agagaagttgtagtttctctcacgaaaaaactagggtcggctatatctaatcacatagatcggtccatatatacctgaaaggttcattcgcaagatgcac 109  Q
    |||||||||  |||||||||||| | |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7883 agagaagtttgagtttctctcactagaaaattagtgtcggctatatggaatcacatagatcggtccatatataccagaaaggttcattcgcaagatgcac 7784  T
Q  110 acaaactcaagtgctaattgttcagcgtcaaaagcagcaatatataatcaagtgagaaaagaaaatcttttatccatgtataatacgtacatatacaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7783 acaaactcaagtgctaattgttcagcgtcaaaagcagcaatatataatcaagtgagaaaagaaaatcttttatccatgtataatacgtacatatacaatt 7684  T
Q  210 atgtaatcaaagaaact 226  Q
    |||||||||||||||||    
T  7683 atgtaatcaaagaaact 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 7605 - 7526
Alignment:
Q  287 taatggacagacaaagtacaacatcttgtgtaacctttgtatatggcaaacacccaacaaatactacatgacaataattt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7605 taatggacagacaaagtacaacatcttgtgtaacctttgtatatggcaaacacccaacaaatactacatgacaataattt 7526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 44092026 - 44092242
Alignment:
Q  10 agagaagttgtagtttctctcacgaaaaaactagggtcggctatatctaatcacatagatcggtccatatatacctgaaaggttcattcgcaagatgcac 109  Q
    |||||||||  |||||||||||| | |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44092026 agagaagtttgagtttctctcactagaaaattagtgtcggctatatggaatcacatagatcggtccatatataccagaaaggttcattcgcaagatgcac 44092125  T
Q  110 acaaactcaagtgctaattgttcagcgtcaaaagcagcaatatataatcaagtgagaaaagaaaatcttttatccatgtataatacgtacatatacaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092126 acaaactcaagtgctaattgttcagcgtcaaaagcagcaatatataatcaagtgagaaaagaaaatcttttatccatgtataatacgtacatatacaatt 44092225  T
Q  210 atgtaatcaaagaaact 226  Q
    |||||||||||||||||    
T  44092226 atgtaatcaaagaaact 44092242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 44092306 - 44092385
Alignment:
Q  287 taatggacagacaaagtacaacatcttgtgtaacctttgtatatggcaaacacccaacaaatactacatgacaataattt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092306 taatggacagacaaagtacaacatcttgtgtaacctttgtatatggcaaacacccaacaaatactacatgacaataattt 44092385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 17693885 - 17693930
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggc 50  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||    
T  17693885 tttagagagaagttggagtttctctcactaaaaaactaaggtcggc 17693930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29617725 - 29617768
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagg 44  Q
    ||||||||||||||||||| | |||||||||| |||||||||||    
T  29617725 aaaatttagagagaagttgaaatttctctcactaaaaaactagg 29617768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 25191338 - 25191376
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactag 43  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  25191338 tttagagagaagttggagtttctctcactaaaaaactag 25191376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8981018 - 8980977
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaacta 42  Q
    |||| |||||||||||||| |||||||||||| |||||||||    
T  8981018 aaaacttagagagaagttggagtttctctcactaaaaaacta 8980977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31013843 - 31013883
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  31013843 tttagagagaagttggagtttctctcactagaaaactaggg 31013883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50194553 - 50194603
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||    
T  50194553 aaaacttagagagaagttggagtttctctcactaaaaaactagggtcggct 50194603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 20988029 - 20988077
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  20988029 tttagagagaagttggagtttctctcactaaaaaactagggccggctat 20988077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 43488871 - 43488918
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  43488871 tttagagagaagttgaagtttctctcactaaaaaactagggccggcta 43488918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9319882 - 9319831
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||||||  |||||||| ||| |||||||||||| ||||||    
T  9319882 aaaatttagagagaagttagagtttctcccactaaaaaactagggccggcta 9319831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 9998281 - 9998234
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  9998281 tttagagagaagttggagtttctcccactagaaaactagggtcggcta 9998234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 10108053 - 10108006
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  10108053 tttagagagaagttggagtttctcccactagaaaactagggtcggcta 10108006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 10232885 - 10232838
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  10232885 tttagagagaagttggagtttctcccactagaaaactagggtcggcta 10232838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 36910929 - 36910979
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctatat 55  Q
    |||| |||||||||| |||||||||||| | |||||||||| |||||||||    
T  36910929 tttatagagaagttggagtttctctcactagaaaactagggccggctatat 36910979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43016674 - 43016628
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtc 47  Q
    ||||||||||||||||||  |||||||||||| | ||||||||||||    
T  43016674 aaaatttagagagaagttagagtttctctcactagaaaactagggtc 43016628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9688504 - 9688541
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaa 38  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  9688504 aaaatttagagagaagttgaagtttctctcactaaaaa 9688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 35865207 - 35865248
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggt 46  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  35865207 tttagagagaagttgaagtttctctcactagaaaactagggt 35865248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45568718 - 45568758
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  45568718 tttagagagaagttggagtttctctcactagaaaactaggg 45568758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47895966 - 47895926
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  47895966 tttagagagaagttggagtttctctcactagaaaactaggg 47895926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 53808132 - 53808180
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcac-gaaaaaactagggtcg 48  Q
    |||| |||||||||||||| ||||||||||||  |||||||||||||||    
T  53808132 aaaacttagagagaagttggagtttctctcactaaaaaaactagggtcg 53808180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1163 - 1118
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggt 46  Q
    ||||||||||||||||||| |||||| ||||| |||||||||||||    
T  1163 aaaatttagagagaagttgaagtttcactcactaaaaaactagggt 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37416531 - 37416482
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggc 50  Q
    ||||||||||||||||||| |||||||||||  ||||||||| |||||||    
T  37416531 aaaatttagagagaagttgaagtttctctcattaaaaaactaaggtcggc 37416482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 12677570 - 12677617
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||||||| | |||||||||| ||||||    
T  12677570 tttagagagaagttggagtttctctcactagaaaactagggccggcta 12677617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 29279845 - 29279890
Alignment:
Q  6 ttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    |||||||||||||| |||||||||||| | |||| |||||||||||    
T  29279845 ttagagagaagttggagtttctctcacaagaaaattagggtcggct 29279890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4098928 - 4098888
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||| ||| ||||||||||||    
T  4098928 tttagagagaagttggagtttctcccactaaaaaactaggg 4098888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 31788281 - 31788237
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcgg 49  Q
    ||||||||||||||| |||||||||||| | |||| |||||||||    
T  31788281 tttagagagaagttggagtttctctcactagaaaattagggtcgg 31788237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 43397393 - 43397441
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    |||| |||||||||| |||||||||||| | |||||||||| |||||||    
T  43397393 tttaaagagaagttggagtttctctcactagaaaactagggccggctat 43397441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8013739 - 8013779
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  8013739 tttagagagaagttgaagtttctctcactaaaaaactaggg 8013779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19296699 - 19296648
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    |||| |||||| ||||||| |||||||| ||| |||||||||||||||||||    
T  19296699 aaaaattagagggaagttggagtttctcccactaaaaaactagggtcggcta 19296648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30757089 - 30757132
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagg 44  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||    
T  30757089 aaaatttagagagaagttgaagtttctcccactaaaaaactagg 30757132  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 19405027 - 19405065
Alignment:
Q  4 atttagagagaagttgtagtttctctcacgaaaaaacta 42  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  19405027 atttagagagaagttggagtttctctcactaaaaaacta 19405065  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13797201 - 13797253
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    |||||||| |||||||||| |||||||||||| | |||||||||  |||||||    
T  13797201 aaaatttaaagagaagttgaagtttctctcactagaaaactaggaccggctat 13797253  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47590135 - 47590095
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaact 41  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  47590135 aaaatttagagagaagttggaatttctctcactaaaaaact 47590095  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 14664193 - 14664145
Alignment:
Q  3 aatttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||    
T  14664193 aatttagagagaagatgaagtttctctcactaaaaaactaggatcggct 14664145  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 24230061 - 24230109
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||| |||||||||||| | |||||||||| |||||||    
T  24230061 tttagagagaagttggagtttctctcactagaaaactagggccggctat 24230109  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38597612 - 38597564
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||| |||||||||||| | |||||||||| |||||||    
T  38597612 tttagagagaagttggagtttctctcactagaaaactagggccggctat 38597564  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8985207 - 8985258
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    |||| |||||||||||||| |||||||||||| ||||| |||||| ||||||    
T  8985207 aaaacttagagagaagttggagtttctctcactaaaaagctagggccggcta 8985258  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 13007043 - 13006996
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  13007043 tttagagagaagttggagtttctcccactaaaaaactagggccggcta 13006996  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 41630324 - 41630279
Alignment:
Q  6 ttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    |||||||||||||| ||||||||||||  ||||| |||||||||||    
T  41630324 ttagagagaagttgaagtttctctcactgaaaaattagggtcggct 41630279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 7036042 - 7035994
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||  |||||||||||| | |||||||||| |||||||    
T  7036042 tttagagagaagtttgagtttctctcactagaaaactagggccggctat 7035994  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22300684 - 22300640
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||    
T  22300684 aaaatttagagagaagttggagtttctctctctaaaaaactaggg 22300640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 26633944 - 26633992
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||| |||||||||||| |||||||||||  |||||||    
T  26633944 tttagagagaagttggagtttctctcactaaaaaactaggaccggctat 26633992  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 4143028 - 4143074
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    |||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  4143028 tttatagagaagttggagtttctcccactaaaaaactagggtcggct 4143074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 22611019 - 22610973
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    ||||||||||||||| |||||||| ||| |||||||||||| |||||    
T  22611019 tttagagagaagttggagtttctcccactaaaaaactagggccggct 22610973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 21686514 - 21686563
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctata 54  Q
    ||||||||||||||  |||||||||||| | ||||||||| |||||||||    
T  21686514 tttagagagaagttaaagtttctctcactagaaaactaggatcggctata 21686563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9643216 - 9643176
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaact 41  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  9643216 aaaacttagagagaagttggagtttctctcactaaaaaact 9643176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 13633949 - 13633909
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  13633949 tttagagagaagttggagtttctctcactagaaaactaggg 13633909  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 15307 - 15260
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||||||| | |||||||||| ||||||    
T  15307 tttagagagaagttgaagtttctctcactagaaaactagggccggcta 15260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 58349 - 58400
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcac-gaaaaaactagggtcggct 51  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||||||||||    
T  58349 aaaacttagagagaagttggagtttctctcactaaaaaaactagggtcggct 58400  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 12170309 - 12170262
Alignment:
Q  7 tagagagaagttgtagtttctctcacgaaaaaactagggtcggctata 54  Q
    ||||||||||||| |||||||||||| | |||||||||| ||||||||    
T  12170309 tagagagaagttggagtttctctcactagaaaactagggccggctata 12170262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30493354 - 30493303
Alignment:
Q  1 aaaatttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    |||| ||| ||||| |||| |||||||||||| |||||||||||||||||||    
T  30493354 aaaacttaaagagaggttggagtttctctcactaaaaaactagggtcggcta 30493303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 33053442 - 33053489
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggcta 52  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  33053442 tttagagagaagttggagtttctcccactagaaaactagggtcggcta 33053489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 3913847 - 3913887
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  3913847 tttagagagaagttggagtttctctcactagaaaactaggg 3913887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 35484652 - 35484698
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggct 51  Q
    ||||||||||||||| |||||||||||| | |||||||||| |||||    
T  35484652 tttagagagaagttggagtttctctcactagaaaactagggccggct 35484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 28093544 - 28093503
Alignment:
Q  7 tagagagaagttgtagtttctctcacgaaaaaactagggtcg 48  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  28093544 tagagagaaggtggagtttctctcactaaaaaactagggtcg 28093503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7337937 - 7337985
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactagggtcggctat 53  Q
    ||||||||||||||| ||||||| |||| | |||||||||| |||||||    
T  7337937 tttagagagaagttgaagtttctttcactagaaaactagggccggctat 7337985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31983998 - 31983958
Alignment:
Q  5 tttagagagaagttgtagtttctctcacgaaaaaactaggg 45  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  31983998 tttagagagaagttggagtttctctcactaaaaatctaggg 31983958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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