View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11549_low_13 (Length: 348)

Name: NF11549_low_13
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11549_low_13
NF11549_low_13
[»] chr8 (1 HSPs)
chr8 (18-348)||(7402643-7402970)
[»] chr4 (2 HSPs)
chr4 (227-272)||(42576947-42576992)
chr4 (223-264)||(45033322-45033363)
[»] chr7 (2 HSPs)
chr7 (225-266)||(10248839-10248880)
chr7 (227-272)||(19989109-19989154)
[»] chr2 (2 HSPs)
chr2 (227-272)||(12457018-12457063)
chr2 (227-267)||(9154170-9154210)
[»] chr1 (1 HSPs)
chr1 (227-272)||(6380151-6380196)
[»] scaffold0001 (1 HSPs)
scaffold0001 (228-272)||(504621-504665)
[»] chr5 (1 HSPs)
chr5 (224-272)||(30264580-30264628)
[»] chr3 (1 HSPs)
chr3 (227-275)||(25353856-25353904)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 7402643 - 7402970
Alignment:
Q  18 tagtttgagtagaaatcaagttttttatgagagtcttgtgtccaattaagttgtgtaacgaatatttatcattgtcatgaaagtggttgatacttcacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7402643 tagtttgagtagaaatcaagttttttatgagagtcttgtgtccaattaagttgtgtaacgaatatttatcattgtcatgaaagtggttgatacttcacac 7402742  T
Q  118 ctattacaagtaacaaaaacaaattaacttgttttattaagtagttttattttattattgaaaatttccatattattctttcttgtttagtcacatgttt 217  Q
    |||||||||||||||||||||||   |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7402743 ctattacaagtaacaaaaacaaa---acttgttttaataaatagttttattttattattgaaaatttccatattattctttcttgtttagtcacatgttt 7402839  T
Q  218 gatgtaaattactccctccgtttctatatctaagcaccattttattagagacaaacggagggagtaattgtcaannnnnnnncttcgtttttacatcgga 317  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||| |    
T  7402840 gatgcaaattactccctccgtctctatatctaagcatcattttattagagacaaacggagggagtaattgtcaattgtttttcttcgtttttacatcgaa 7402939  T
Q  318 ttttccaccttgttattgacaattgctacct 348  Q
    |||||||||||||||||||||||||||||||    
T  7402940 ttttccaccttgttattgacaattgctacct 7402970  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 42576992 - 42576947
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  42576992 tactccctccgttcctatatctaagcaccattttattagaggcaaa 42576947  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 45033322 - 45033363
Alignment:
Q  223 aaattactccctccgtttctatatctaagcaccattttatta 264  Q
    |||||| | ||||||| |||||||||||||||||||||||||    
T  45033322 aaattatttcctccgtctctatatctaagcaccattttatta 45033363  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 10248880 - 10248839
Alignment:
Q  225 attactccctccgtttctatatctaagcaccattttattaga 266  Q
    ||||||| |||||| |||||||||||||||| ||||||||||    
T  10248880 attactctctccgtctctatatctaagcacccttttattaga 10248839  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 19989154 - 19989109
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaa 19989109  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 12457018 - 12457063
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    ||||||||||||  ||||||||||||||| ||||||||||| ||||    
T  12457018 tactccctccgtccctatatctaagcacccttttattagaggcaaa 12457063  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 9154210 - 9154170
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagag 267  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  9154210 tactccctccgtccctatatctaagcacccttttattagag 9154170  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 6380151 - 6380196
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    |||||||||| |  ||||||||||||||| ||||||||||||||||    
T  6380151 tactccctccatccctatatctaagcacccttttattagagacaaa 6380196  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 504665 - 504621
Alignment:
Q  228 actccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    |||||||||||  |||||| |||||||| ||||||||||||||||    
T  504665 actccctccgtccctatatgtaagcacctttttattagagacaaa 504621  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 30264628 - 30264580
Alignment:
Q  224 aattactccctccgtttctatatctaagcaccattttattagagacaaa 272  Q
    |||||||||||||||  ||||||||||||||  ||||||||||| ||||    
T  30264628 aattactccctccgtccctatatctaagcactcttttattagaggcaaa 30264580  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 25353856 - 25353904
Alignment:
Q  227 tactccctccgtttctatatctaagcaccattttattagagacaaacgg 275  Q
    |||||||| | | ||||||| |||||||| |||||||||||||||||||    
T  25353856 tactcccttcatctctatatataagcacccttttattagagacaaacgg 25353904  T

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