View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_14 (Length: 347)
Name: NF11549_low_14
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_14 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 129 - 337
Target Start/End: Complemental strand, 41311395 - 41311187
Alignment:
| Q |
129 |
ataaaaatacatggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
228 |
Q |
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| T |
41311395 |
ataaaaatacatggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
41311296 |
T |
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| Q |
229 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttatta |
328 |
Q |
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| T |
41311295 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttatta |
41311196 |
T |
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| Q |
329 |
ttgcctttg |
337 |
Q |
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||||||||| |
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| T |
41311195 |
ttgcctttg |
41311187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 140 - 334
Target Start/End: Complemental strand, 43165062 - 43164868
Alignment:
| Q |
140 |
tggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaag |
239 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
43165062 |
tggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaag |
43164963 |
T |
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| Q |
240 |
ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcct |
334 |
Q |
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| T |
43164962 |
acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcct |
43164868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 337
Target Start/End: Original strand, 30165608 - 30165740
Alignment:
| Q |
205 |
tttgattctgatttgccttataagaatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatg |
304 |
Q |
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||||||||| |||||||||||| ||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
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| T |
30165608 |
tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt |
30165707 |
T |
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| Q |
305 |
ataagactgaaatggatgttattattgcctttg |
337 |
Q |
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| T |
30165708 |
atcagactgaaatggatgttattattgcctttg |
30165740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 337
Target Start/End: Complemental strand, 30125328 - 30125141
Alignment:
| Q |
150 |
ttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagctctaatggt |
249 |
Q |
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|||||||||||||||||| ||| ||||||||| |||| | ||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||| || |
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| T |
30125328 |
ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacgga |
30125229 |
T |
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| Q |
250 |
ggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttg |
337 |
Q |
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| T |
30125228 |
tggcccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttg |
30125141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 30131178 - 30131096
Alignment:
| Q |
254 |
ccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgccttt |
336 |
Q |
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||||||| |||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| |
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| T |
30131178 |
ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagccttt |
30131096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 28180559 - 28180514
Alignment:
| Q |
141 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaat |
186 |
Q |
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| T |
28180559 |
ggtatctagttcaattgaattagagattttctcattgagagctaat |
28180514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 21430161 - 21430244
Alignment:
| Q |
141 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttat |
225 |
Q |
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| T |
21430161 |
ggtatctagttcaattgacttagagattttctcattgagagctaatcaat-ggaaaaaattgaggttgcttctcatttgccttat |
21430244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 21426470 - 21426550
Alignment:
| Q |
146 |
ctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttata |
226 |
Q |
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||||||||||||||||| |||| ||||||||||||| | || ||||| ||||||||||| ||| |||| |||||||||||| |
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| T |
21426470 |
ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttata |
21426550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 2039 - 1971
Alignment:
| Q |
156 |
tgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgcctta |
224 |
Q |
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|||||||||||| ||||||||||||| |||| | ||| ||||||||||||||| |||| ||||||||| |
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| T |
2039 |
tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta |
1971 |
T |
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