View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_18 (Length: 257)
Name: NF11549_low_18
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 34720492 - 34720341
Alignment:
| Q |
88 |
agggttatttttgtctttttcaacaaaatatggtcttcacttttgtttccgttcaatcctaaaagattttagtgtgggtcctgcctaaaactttctttcc |
187 |
Q |
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| T |
34720492 |
agggttatttttgtctttttcaacaaaatatggtctccatttttgtttccgtccaatccgaaaagattttagtgtgggtcctgcctaaaactttcttttc |
34720393 |
T |
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| Q |
188 |
tttcttgtttgcagggattcaaactatagaaaatgaatctttccaccgacttt |
240 |
Q |
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| T |
34720392 |
tttcttgtttgcagtg-ttcaaattatagaaagtgaatctttccactgacttt |
34720341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 34720544 - 34720508
Alignment:
| Q |
12 |
ggatttaataccaatgtatacattgtttattctgaag |
48 |
Q |
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| T |
34720544 |
ggatttaataccaatgtatacattgtttattctgaag |
34720508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 54802236 - 54802427
Alignment:
| Q |
60 |
gttacatattgctaatattacattaaatagggttatttttgtctttttcaacaaaatatggtcttcacttttgtttccgttcaatcc------taaaaga |
153 |
Q |
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| T |
54802236 |
gttacatattgctaatattacattaaatagggttatttttgtctttttcaacaaaatattgtctccacttttgtttccgtccaatccaacaaagaaaaga |
54802335 |
T |
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| Q |
154 |
ttttagtgtgggtcctgcctaaaactttctttcctttcttgttt-----gcagggatt-caaactatagaaaatgaatctttccaccgactt |
239 |
Q |
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| T |
54802336 |
ttttagtgtgggtcctgcctaaaactttttttccttccttgtttccagggcaggggttccaaactatagaaagtaaatctttccactgactt |
54802427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 5386021 - 5386073
Alignment:
| Q |
58 |
gtgttacatattgctaatattacatta---aatagggttatttttgtcttttt |
107 |
Q |
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| T |
5386021 |
gtgttacatattgttaatattatattattaaatagggttatttttgtcttttt |
5386073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 46599509 - 46599724
Alignment:
| Q |
14 |
atttaataccaatgtatacattgtttattctgaagnnnnnnnnngtgttacatattgctaatattacattaaatagggttatttttgtctttttcaacaa |
113 |
Q |
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| T |
46599509 |
atttaataccaatgtatacattgtttattctg--gaaaaaaaatgcgttacatattgctaatattacattaaatagggttatttttatctttttcaataa |
46599606 |
T |
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| Q |
114 |
aatatggtcttcacttttgtttccgttcaatcc------taaaagattttagtgtgggtcctgcctaaaactttctttcctttcttgtttgcagggattc |
207 |
Q |
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| T |
46599607 |
aatatggtctccacttttgtttacgtccaatccagcaaagaaaagattttagcatgagtcctgcctaaaactttctttcctttcttttttgcagggttcc |
46599706 |
T |
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| Q |
208 |
aaactatagaaaatgaat |
225 |
Q |
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| T |
46599707 |
aaactatagaaagtgaat |
46599724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 39878943 - 39878987
Alignment:
| Q |
64 |
catattgctaatattacattaaatagggttatttttgtctttttc |
108 |
Q |
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| T |
39878943 |
catattgttgatattacattaaaaagggttacttttgtctttttc |
39878987 |
T |
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