View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11549_low_21 (Length: 230)

Name: NF11549_low_21
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11549_low_21
NF11549_low_21
[»] chr5 (3 HSPs)
chr5 (1-230)||(2707810-2708041)
chr5 (179-213)||(6217721-6217755)
chr5 (185-221)||(34034905-34034941)
[»] chr8 (2 HSPs)
chr8 (181-220)||(21145708-21145747)
chr8 (180-222)||(7574367-7574409)
[»] chr6 (4 HSPs)
chr6 (185-220)||(516063-516098)
chr6 (185-220)||(10219537-10219572)
chr6 (185-222)||(21020851-21020888)
chr6 (188-220)||(9307534-9307566)
[»] chr1 (7 HSPs)
chr1 (185-220)||(31134795-31134830)
chr1 (181-220)||(32670051-32670090)
chr1 (185-220)||(32669785-32669820)
chr1 (185-220)||(34177556-34177591)
chr1 (181-217)||(6541002-6541038)
chr1 (186-222)||(31406165-31406201)
chr1 (182-222)||(36144782-36144822)
[»] chr3 (5 HSPs)
chr3 (179-220)||(14984401-14984441)
chr3 (182-222)||(41898089-41898129)
chr3 (185-219)||(23567371-23567405)
chr3 (185-214)||(14984731-14984760)
chr3 (180-221)||(34294175-34294216)
[»] chr7 (2 HSPs)
chr7 (181-217)||(30839975-30840011)
chr7 (185-214)||(18942737-18942766)
[»] chr4 (3 HSPs)
chr4 (185-220)||(12034382-12034417)
chr4 (185-218)||(11298456-11298489)
chr4 (184-220)||(51151092-51151128)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2708041 - 2707810
Alignment:
Q  1 tggattcgagttccatcattgtgtaatttctgagcaatgccgatactccaacactaataagtatatatgctattcaatcatacgaatgaaaataac-aaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2708041 tggattcgagttccatcattgtgtaatttctgagcaatgccgatactccaacactaataagtatatatgctattcaatcatacgaatgaaaataacaaaa 2707942  T
Q  100 tctacattgctccactcaattactatagttttagaaatatatatacaaaa-tgtgacaacaaaattagtctaaatatatgttgggataatagtcattttg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2707941 tctacattgctccactcaattactatagttttagaaatatatatacaaaagtgtgacaacaaaattagtctaaatatatgttggggtaatagtcattttg 2707842  T
Q  199 gtccctgaatgtgtaacgagtaatgtcaaaat 230  Q
    ||||||||||||||||||||||||||||||||    
T  2707841 gtccctgaatgtgtaacgagtaatgtcaaaat 2707810  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 6217755 - 6217721
Alignment:
Q  179 ttgggataatagtcattttggtccctgaatgtgta 213  Q
    |||||||||||||||||||||||| ||||||||||    
T  6217755 ttgggataatagtcattttggtccatgaatgtgta 6217721  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 34034941 - 34034905
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagtaa 221  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  34034941 taatagtcattttagtccctgaatgtgtaatgagtaa 34034905  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 21145747 - 21145708
Alignment:
Q  181 gggataatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  21145747 gggataatagtcattttggttcctgaatgtgtaacgagta 21145708  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 7574367 - 7574409
Alignment:
Q  180 tgggataatagtcattttggtccctgaatgtgtaacgagtaat 222  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||    
T  7574367 tgggataatagacattttggtccttgaatgtgtaacaagtaat 7574409  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 516098 - 516063
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  516098 taatagtcattttggtccctgaatgtgtaacgagta 516063  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 10219537 - 10219572
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  10219537 taatagtcattttggtccctgaatgtgtaacgagta 10219572  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 21020851 - 21020888
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagtaat 222  Q
    |||||||||||||||||||||||| | |||||||||||    
T  21020851 taatagtcattttggtccctgaatatataacgagtaat 21020888  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 9307566 - 9307534
Alignment:
Q  188 tagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||| ||||||||||||||||||||||    
T  9307566 tagtcattttagtccctgaatgtgtaacgagta 9307534  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 31134830 - 31134795
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  31134830 taatagtcattttggtccctgaatgtgtaacgagta 31134795  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 32670090 - 32670051
Alignment:
Q  181 gggataatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32670090 gggataatagtcattttgatccctgaatgtgtaacgagta 32670051  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 32669785 - 32669820
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||| |||||||||||||||||    
T  32669785 taatagtcattttggtccatgaatgtgtaacgagta 32669820  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 34177591 - 34177556
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||||||||||||||| |||||    
T  34177591 taatagtcattttggtccctgaatgtgtaatgagta 34177556  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6541002 - 6541038
Alignment:
Q  181 gggataatagtcattttggtccctgaatgtgtaacga 217  Q
    |||||||||||||||||  ||||||||||||||||||    
T  6541002 gggataatagtcattttaatccctgaatgtgtaacga 6541038  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 31406165 - 31406201
Alignment:
Q  186 aatagtcattttggtccctgaatgtgtaacgagtaat 222  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  31406165 aatagtcattttcgtccctgcatgtgtaacgagtaat 31406201  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 36144782 - 36144822
Alignment:
Q  182 ggataatagtcattttggtccctgaatgtgtaacgagtaat 222  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  36144782 ggataatagtcattttggtccttgaatatgtaatgagtaat 36144822  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 14984401 - 14984441
Alignment:
Q  179 ttgggataatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  14984401 ttgggataatagtcattttggt-cctgaatgtgtaacgagta 14984441  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 41898129 - 41898089
Alignment:
Q  182 ggataatagtcattttggtccctgaatgtgtaacgagtaat 222  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  41898129 ggataatagttattttggtccttgaatgtgtaacgagtaat 41898089  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 23567405 - 23567371
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagt 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  23567405 taatagtcattttgatccctgaatgtgtaacgagt 23567371  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 14984760 - 14984731
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaa 214  Q
    ||||||||||||||||||||||||||||||    
T  14984760 taatagtcattttggtccctgaatgtgtaa 14984731  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 34294216 - 34294175
Alignment:
Q  180 tgggataatagtcattttggtccctgaatgtgtaacgagtaa 221  Q
    ||||||||||||||||||| ||| | ||||||||||||||||    
T  34294216 tgggataatagtcattttgatccttaaatgtgtaacgagtaa 34294175  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 30840011 - 30839975
Alignment:
Q  181 gggataatagtcattttggtccctgaatgtgtaacga 217  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30840011 gggataatagtcattttggtccctgaatgtataacga 30839975  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 18942737 - 18942766
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaa 214  Q
    ||||||||||||||||||||||||||||||    
T  18942737 taatagtcattttggtccctgaatgtgtaa 18942766  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 12034382 - 12034417
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||||||||||||||||||||| |||||||||    
T  12034382 taatagtcattttggtccctgaatgtataacgagta 12034417  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 11298456 - 11298489
Alignment:
Q  185 taatagtcattttggtccctgaatgtgtaacgag 218  Q
    ||||||||||||| ||||||||||||||||||||    
T  11298456 taatagtcattttagtccctgaatgtgtaacgag 11298489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 51151128 - 51151092
Alignment:
Q  184 ataatagtcattttggtccctgaatgtgtaacgagta 220  Q
    |||||||| |||||||||| |||||||||||||||||    
T  51151128 ataatagttattttggtccttgaatgtgtaacgagta 51151092  T

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