View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11549_low_23 (Length: 212)

Name: NF11549_low_23
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11549_low_23
NF11549_low_23
[»] chr1 (2 HSPs)
chr1 (71-212)||(115540-115680)
chr1 (1-72)||(115355-115426)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 115540 - 115680
Alignment:
Q  71 atgatgtgttgatgtgaaatgtttcctgcattagccaaatgtgataagttgcggggaaaggagatgattaagataagaccctaaaattaaaatgatgatg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  115540 atgatgtgttgatgtgaaatgtttcctgcattagccaaatgtgataagttgcggggaaaggagatgattaagataagaccctaaaattaaaatgatgctg 115639  T
Q  171 cgtacgtattctaagttgattttttcaaagaacgacactcta 212  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  115640 cgtacgtattctaaattga-tttttcaaagaacgacactcta 115680  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 115355 - 115426
Alignment:
Q  1 tatggtcatagtcttgattggatatatattttaaagtttcatgcagagttattatcaaattaagagccatat 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115355 tatggtcatagtcttgattggatatatattttaaagtttcatgcagagttattatcaaattaagagccatat 115426  T

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