View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_5 (Length: 432)
Name: NF11549_low_5
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 9833752 - 9834161
Alignment:
| Q |
16 |
aaaaacttataagcatttaattaaactatttatccaaacagtcataatactgtcacttgaaatatctattttacaaaaacgtgtgcagataaactcgttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833752 |
aaaaacttataagcatttaattaaactatttatccaaacagtcataatactgtcacttgaaatatctattttacaaaaacgtgtgcagataaactcgttg |
9833851 |
T |
|
| Q |
116 |
tgtcaacctcttgctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9833852 |
tgtcaacctcttgctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcgcaaaa |
9833951 |
T |
|
| Q |
216 |
agtcgttgaagtaaatgcattggccaaggcattggctggtcaaaaggatgaggtaatcaaccttcttttcctttatcatacatcaaacaaaacttgataa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833952 |
agtcgttgaagtaaatgcattggccaaggcattggctggtcaaaaggatgaggtaatcaaccttcttttcctttatcatacatcaaacaaaacttgataa |
9834051 |
T |
|
| Q |
316 |
caaaattgcatcttagttaatttttatctatcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9834052 |
caaaattgcatcttagttaatttttatctatcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggc |
9834151 |
T |
|
| Q |
416 |
cttcttctct |
425 |
Q |
| |
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|||||||||| |
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| T |
9834152 |
cttcttctct |
9834161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 112 - 272
Target Start/End: Complemental strand, 33468773 - 33468613
Alignment:
| Q |
112 |
gttgtgtcaacctcttgctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgccc |
211 |
Q |
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|||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||| ||||| |||||| ||||||||||||||| |
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| T |
33468773 |
gttgtgtccacttcttgctcacttcttcacactgctgtggatctcgttaacgagaccaagttggatgatgaaattaagtcatggttagcttttgctgccc |
33468674 |
T |
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| Q |
212 |
aaaaagtcgttgaagtaaatgcattggccaaggcattggctggtcaaaaggatgaggtaat |
272 |
Q |
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||||||| ||||||||||||||||||||||| ||| | || || | |||||||||||||| |
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| T |
33468673 |
aaaaagttgttgaagtaaatgcattggccaatgcacttgcaggcaacaaggatgaggtaat |
33468613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 504145 - 504113
Alignment:
| Q |
23 |
tataagcatttaattaaactatttatccaaaca |
55 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
504145 |
tataagcacttaattaaactatttatccaaaca |
504113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 35946784 - 35946921
Alignment:
| Q |
133 |
cttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagtaaatg |
232 |
Q |
| |
|
||||| |||||||| |||||||| || || |||||||||||||| | || |||||||| ||||| |||||||| || |||||| | ||||||||||||| |
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| T |
35946784 |
cttcttcacactgcagttgatctggtgaatgagaccaagctggaccaagaaattaaatcttggcttgcttttgcagcacaaaaaatagttgaagtaaatg |
35946883 |
T |
|
| Q |
233 |
cattggccaaggcattggctggtcaaaaggatgaggta |
270 |
Q |
| |
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| ||| ||||||||||| |||| ||||||||||||||| |
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|
| T |
35946884 |
ccttgtccaaggcattgtctggacaaaaggatgaggta |
35946921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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