View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_7 (Length: 394)
Name: NF11549_low_7
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 6947681 - 6948034
Alignment:
| Q |
17 |
aatatatgttgctactaccatcaannnnnnnnactgaaggaatttccttatgttgatatgcagattcttgagtgcactcaatatttataaaccgaaagaa |
116 |
Q |
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| T |
6947681 |
aatatatgttgctactaccatcaattttttttactgaaggaatttccttatgttgatatgcagattcatgagtgcactcaatatatataaaccgaaagaa |
6947780 |
T |
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| Q |
117 |
aaacatgtactaagcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaa |
216 |
Q |
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| T |
6947781 |
aaacatgtactaagcataggtaaatctacaatgcagttc-tttcatgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaac-aa |
6947878 |
T |
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| Q |
217 |
agcagtggcctcttaactatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaactt |
316 |
Q |
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| T |
6947879 |
agcagtggcc---------tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaactt |
6947969 |
T |
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| Q |
317 |
cctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
381 |
Q |
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| T |
6947970 |
cctcatcttccttgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
6948034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 6950182 - 6950367
Alignment:
| Q |
50 |
ctgaaggaatttccttatgttgatatgcagattcttgagtgcactcaat-atttataaaccgaaagaa--aaacatgtactaagcataggtaaatcta-c |
145 |
Q |
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| T |
6950182 |
ctgaaggaatttgctcatgttgatatgcagattcatgaacgggctcaaacatacataaaccgaaacaacaaaacaagtaataagcatagataaatctaac |
6950281 |
T |
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| Q |
146 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
233 |
Q |
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| T |
6950282 |
aatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 11160986 - 11160872
Alignment:
| Q |
264 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
363 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
364 |
ctaatctcctccggc |
378 |
Q |
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| T |
11160886 |
cgaatctcctccggc |
11160872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 286
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
255 |
tagagactaaaccctagactctaatcagtttt |
286 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 11179071 - 11179145
Alignment:
| Q |
300 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctc |
374 |
Q |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctc |
11179145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 5647896 - 5647852
Alignment:
| Q |
102 |
tataaaccgaaagaaaaacatgtactaagcataggtaaatctaca |
146 |
Q |
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| T |
5647896 |
tataaatcgaaagaaaaacaagtactaagcataaataaatctaca |
5647852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 661917 - 662062
Alignment:
| Q |
236 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
335 |
Q |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
336 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
381 |
Q |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttc |
662062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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