View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11549_low_9 (Length: 391)
Name: NF11549_low_9
Description: NF11549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11549_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 52715811 - 52715542
Alignment:
| Q |
9 |
agcagagatctttctgagaaactattattaaataataatgttgtagtaatgtgatggtggagattaattgaaagggacataaacaaaacagatgaatagt |
108 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52715811 |
agcaaagatctttctcagaaactattattaaataataatgttgtagtaatgtgatg-tggagattaattaaaagggacataaacaaaacagatgaatagt |
52715713 |
T |
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| Q |
109 |
ttaatacacagttcaccatnnnnnnnnnnnnnnnnnnnnnngatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcat |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52715712 |
ttaatacacagttcaccataaaaaaaaaaaaaa--------gatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcat |
52715621 |
T |
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| Q |
209 |
cataattgattaattaactagtatgatctgtcattttattatgtgttagtttagaacaaacttcaccggagtattgttg |
287 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52715620 |
cataattgattaattaactagtatgatctgtcgttttattatgtgttagtttagaacaaacttcaccggagtattgttg |
52715542 |
T |
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