View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1154_high_19 (Length: 250)
Name: NF1154_high_19
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10601964 - 10601761
Alignment:
| Q |
1 |
tctcaaaggtagtagaagttgctaaactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcattattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601964 |
tctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcattattcat |
10601865 |
T |
|
| Q |
101 |
ctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcatattttcgcccaccctttttcttctctttctctttacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10601864 |
ctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcgtattttcgcccaccctttttcttctctttctccttacca |
10601765 |
T |
|
| Q |
201 |
tcat |
204 |
Q |
| |
|
|||| |
|
|
| T |
10601764 |
tcat |
10601761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16977656 - 16977747
Alignment:
| Q |
1 |
tctcaaaggtagtagaagttgctaaactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
92 |
Q |
| |
|
||||||||| | ||||| |||||| ||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
16977656 |
tctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
16977747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 16977747 - 16977812
Alignment:
| Q |
29 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
94 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16977747 |
accataatctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctcatt |
16977812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 16968604 - 16968661
Alignment:
| Q |
81 |
ttcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctca |
138 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||| | |||||||| ||| ||||||||| |
|
|
| T |
16968604 |
ttcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctca |
16968661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 3895310 - 3895268
Alignment:
| Q |
199 |
catcataagcataatctctagctttctccccagcactctctgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895310 |
catcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 3895056 - 3895016
Alignment:
| Q |
201 |
tcataagcataatctctagctttctccccagcactctctgc |
241 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University