View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_high_22 (Length: 236)
Name: NF1154_high_22
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 6026148 - 6026345
Alignment:
| Q |
20 |
tagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
119 |
Q |
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| T |
6026148 |
tagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
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| Q |
120 |
cagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
217 |
Q |
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| T |
6026248 |
cagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
6026345 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
144 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
203 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
46 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
119 |
Q |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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