View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_high_3 (Length: 499)
Name: NF1154_high_3
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Complemental strand, 5033141 - 5032665
Alignment:
| Q |
12 |
ttatgttatgtgtaaaaggaatcaaatagttgttgtcgttatggaagnnnnnnnnnnnnnnn-ggttacaatcgttatggaaggtttcatcgcactaatt |
110 |
Q |
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| T |
5033141 |
ttatgttatgtgtaaaaggaatcaaatagttgttgtccttatggaaggtttttttttttttttggttacaatcgttatggaaggtttcatcgcactaatt |
5033042 |
T |
|
| Q |
111 |
aacgacactgttttagattttccctaatccttttacaaatagtgccgttttgtttatagatagataatttgataa-gtagtgctaccggtaactttccaa |
209 |
Q |
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| T |
5033041 |
aacgacactgttttagattttccctaatccttttacaaatagtgcctttttgtttatagatagataatttgataaagtagtgctaccggtaactttccaa |
5032942 |
T |
|
| Q |
210 |
aatcattttgtattttattgtaaaaaataaacacatattttagtacttaattagttgtgaatcttgtgataccattttgctagtggaaggaaaaaatata |
309 |
Q |
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| T |
5032941 |
actcattttgtattttattgtaaaaaataaacacatattttagtacttaaatagttgtgaatcttgtgataccattttgctagtggaaggaaaaaatata |
5032842 |
T |
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| Q |
310 |
tgaatatgaaggacgacaaatatttatatttc-ttttacgcacatgttagtatggttctctctttatattactgctagagtgattctttacctatcacac |
408 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032841 |
tgaatatgaaggacgacaaatatttatatttctttttacgcacatgttagtatggttctctctttatattactgctagagtgattctttacctatcacac |
5032742 |
T |
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| Q |
409 |
ataattgtttcacttaatgtgctctagttgacaattttcaagcacttataacaacttgtcaattttcaattactatatt |
487 |
Q |
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| T |
5032741 |
ataattgtttcacttaatgtg--ctagttgacaattttcaagcacttataacaacttgtcaattttcaattactatatt |
5032665 |
T |
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