View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1154_high_6 (Length: 393)

Name: NF1154_high_6
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1154_high_6
NF1154_high_6
[»] chr4 (1 HSPs)
chr4 (96-382)||(1004896-1005182)
[»] chr1 (2 HSPs)
chr1 (291-357)||(52473258-52473324)
chr1 (180-226)||(41449378-41449424)
[»] chr8 (2 HSPs)
chr8 (322-353)||(21223399-21223430)
chr8 (180-226)||(21223556-21223602)
[»] chr2 (1 HSPs)
chr2 (168-211)||(5838978-5839021)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 96 - 382
Target Start/End: Original strand, 1004896 - 1005182
Alignment:
Q  96 ctaagtttgtttgcttctggcgaagtataccttagtctacttctcaccaaggatggcatagggagcgagctatggcgcccacacgtttcaacaattttac 195  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  1004896 ctaagtttgtttgcttctggccaagtataccttagtctacttgtcaccaaggatagcatagggagcgatctatggcgcccacacgtttcaacaattttac 1004995  T
Q  196 aggttctagtctccatacagggtcaaatcttaacagaacctataatcaaacctccagcggccaaaagtacttcccagatatgcaataaggatgtgttcac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1004996 aggttctagtctccatacagggtcaaatcttaacagaacctataatcaaacctccagcggccaaaagtacttcccagatatgcaataaggatgtgttcac 1005095  T
Q  296 taaatcattgtcgataatggaacaaatgataagaaggcctccaaaggtttgattctagtctttctttcttttcttttatatcttcat 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1005096 taaatcattgtcgataatggaacaaatgataagaaggcctccaaaggtttgattctagtctttctttcttttcttttatatcttcat 1005182  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 52473258 - 52473324
Alignment:
Q  291 ttcactaaatcattgtcgataatggaacaaatgataagaaggcctccaaaggtttgattctagtctt 357  Q
    ||||| |||||||||  | ||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  52473258 ttcaccaaatcattgctgttaacggaacaaataataagaaggcctccaaaggtttgattctggtctt 52473324  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 41449378 - 41449424
Alignment:
Q  180 gtttcaacaattttacaggttctagtctccatacagggtcaaatctt 226  Q
    |||||||||||  |||||||||||||||||||||| |||| ||||||    
T  41449378 gtttcaacaatgctacaggttctagtctccatacaaggtctaatctt 41449424  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 353
Target Start/End: Complemental strand, 21223430 - 21223399
Alignment:
Q  322 tgataagaaggcctccaaaggtttgattctag 353  Q
    ||||||||||||||||||||||||||||||||    
T  21223430 tgataagaaggcctccaaaggtttgattctag 21223399  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 21223602 - 21223556
Alignment:
Q  180 gtttcaacaattttacaggttctagtctccatacagggtcaaatctt 226  Q
    |||||||||||||||||||| || ||||||||||| |||| ||||||    
T  21223602 gtttcaacaattttacaggtcctggtctccatacaaggtctaatctt 21223556  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 5839021 - 5838978
Alignment:
Q  168 tggcgcccacacgtttcaacaattttacaggttctagtctccat 211  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||    
T  5839021 tggcgtccacatgtttcaacaattctacaggttctagtctccat 5838978  T

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