View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1154_low_1 (Length: 647)

Name: NF1154_low_1
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1154_low_1
NF1154_low_1
[»] chr6 (13 HSPs)
chr6 (77-375)||(33670058-33670356)
chr6 (400-595)||(33669842-33670037)
chr6 (403-595)||(33698730-33698925)
chr6 (130-359)||(33678310-33678534)
chr6 (143-359)||(33698967-33699188)
chr6 (522-591)||(33678177-33678246)
chr6 (422-493)||(21248664-21248735)
chr6 (311-357)||(21117346-21117392)
chr6 (419-503)||(21201734-21201816)
chr6 (77-129)||(33678551-33678603)
chr6 (509-592)||(33690224-33690306)
chr6 (544-594)||(21201661-21201711)
chr6 (544-586)||(21248779-21248821)
[»] scaffold0016 (6 HSPs)
scaffold0016 (403-595)||(82238-82430)
scaffold0016 (220-375)||(105518-105671)
scaffold0016 (143-359)||(81981-82196)
scaffold0016 (400-488)||(89988-90076)
scaffold0016 (311-360)||(89847-89896)
scaffold0016 (141-190)||(105681-105730)
[»] scaffold0060 (1 HSPs)
scaffold0060 (311-360)||(30806-30855)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 77 - 375
Target Start/End: Complemental strand, 33670356 - 33670058
Alignment:
Q  77 atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttgatcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  33670356 atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttgatcccacatgtcttttctctttggtccaaaaagtagaaaccatgcgc 33670257  T
Q  177 cttcatattacaataagctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctataca 276  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33670256 cttcatattacaataatctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctataca 33670157  T
Q  277 aatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact 375  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33670156 aatattgaatccattaagataccgttacgaagctttttatctcttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact 33670058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 400 - 595
Target Start/End: Complemental strand, 33670037 - 33669842
Alignment:
Q  400 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33670037 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtct 33669938  T
Q  500 ttttcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactac 595  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33669937 ttttcgttgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactac 33669842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 403 - 595
Target Start/End: Complemental strand, 33698925 - 33698730
Alignment:
Q  403 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatc-aacttgtcttt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||    
T  33698925 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctatacgataaaccaaagcaaacatgtcttt 33698826  T
Q  502 ttcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttctttt--ttatataagaaatcgacaaaccaatcaactactac 595  Q
    || ||| |||||||||| ||||||||| ||| ||||||||| ||||| |||||||||||  |||| |||||||| |||||||||||| ||||||||    
T  33698825 tttgtcttttagaaaatggttccactaatgccacttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactac 33698730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 130 - 359
Target Start/End: Complemental strand, 33678534 - 33678310
Alignment:
Q  130 atcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagtatag 229  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||  ||||||||||||||| ||||||||    
T  33678534 atcccacacgtcttttctctttggtccaaaaaggagaaaccatgctccttcctattaaaataagctccaagaatctgatataatacgtaacttagtatag 33678435  T
Q  230 cttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaag 329  Q
    ||||||||| |||||||| || ||  |||||||  ||||||||||||||| |  |||||||| ||||| |||| |||||| |||||||||||||||||||    
T  33678434 cttcaaaatattactatt-aagtaaaaaaatat--taattctatacaaatctaaaatccatttagatatcgtt-caaagc-ttttctctcttgcataaag 33678340  T
Q  330 tagagagggctttccatgtgttcatagaca 359  Q
    ||||||||||||||||||||||||| ||||    
T  33678339 tagagagggctttccatgtgttcattgaca 33678310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 143 - 359
Target Start/End: Complemental strand, 33699188 - 33698967
Alignment:
Q  143 tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagtat-----agcttcaaaa 237  Q
    ||||||||||||||||||||  || || |||| ||||  ||||||||||| |||||||||| | |||||||||| |||||| |||     |||||||| |    
T  33699188 tttctctttggtccaaaaagaggagaccatgctcctttctattacaataatctccaagaatcaaatataatacgcaacctaatatcttctagcttcaaga 33699089  T
Q  238 ttttactattgaattagtaaaat--attataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagaga 335  Q
      |||| |||||||||||||||   |  | ||||||| |||||| || |||||||||||||||| || ||| ||||||| ||| ||||||||||||| ||    
T  33699088 gattaccattgaattagtaaaaataacaacaattctaaacaaatcttaaatccattaagatacccttccaa-gcttttt-tcttttgcataaagtaggga 33698991  T
Q  336 gggctttccatgtgttcatagaca 359  Q
    ||||||||||||||||||| ||||    
T  33698990 gggctttccatgtgttcattgaca 33698967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 33678246 - 33678177
Alignment:
Q  522 tccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaacta 591  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33678246 tccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatccacta 33678177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 21248664 - 21248735
Alignment:
Q  422 gtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaac 493  Q
    |||||||| |||||||||||||||||||||||||||||||| |   ||||||||| ||||||| ||||||||    
T  21248664 gtccctttcatcccattctttactaattgaagcaacaattctacaatttcctatttgataaactaaatcaac 21248735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 21117392 - 21117346
Alignment:
Q  311 ttttctctcttgcataaagtagagagggctttccatgtgttcataga 357  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21117392 ttttctcttttgcataaagtcgagagggctttccatgtgttcataga 21117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 503
Target Start/End: Complemental strand, 21201816 - 21201734
Alignment:
Q  419 aaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtcttttt 503  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| | | ||  ||||| ||||||| ||| |||| |||||||||    
T  21201816 aaagtccattttaccccattctttactaattgaagcaacaattctacgatt--ctatttgataaactaaagcaacatgtcttttt 21201734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 33678603 - 33678551
Alignment:
Q  77 atgaattaatctagtaaacttcttctcgaaaacggataagagattccactttg 129  Q
    |||||||||||||| ||||||||||||   || ||||||||||||||||||||    
T  33678603 atgaattaatctaggaaacttcttctcaggaaaggataagagattccactttg 33678551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 33690306 - 33690224
Alignment:
Q  509 tttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactac 592  Q
    |||||||||| ||||||||| ||| | | ||| | ||||||||||||||||||  |||||||||| ||||||| |||| |||||    
T  33690306 tttagaaaatggttccacta-tgccagtcccattactttctatatttctttttagtataagaaatggacaaactaatccactac 33690224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 594
Target Start/End: Complemental strand, 21201711 - 21201661
Alignment:
Q  544 ctttctatatttcttttttatataagaaatcgacaaaccaatcaactacta 594  Q
    |||||||||||||||||| ||||||| ||| ||||| |||||| |||||||    
T  21201711 ctttctatatttctttttaatataaggaatggacaagccaatcgactacta 21201661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 21248779 - 21248821
Alignment:
Q  544 ctttctatatttcttttttatataagaaatcgacaaaccaatc 586  Q
    |||||||||||||||||||||||||| ||  ||||||||||||    
T  21248779 ctttctatatttcttttttatataaggaaaggacaaaccaatc 21248821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 121; Significance: 1e-61; HSPs: 6)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 403 - 595
Target Start/End: Original strand, 82238 - 82430
Alignment:
Q  403 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaatcaacttgtctttt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||| ||||||||    
T  82238 gaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaaattttcctataagataaaccaaagcaacatgtctttt 82337  T
Q  503 tcgtcgtttagaaaatagttccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaactactac 595  Q
    | ||| |||| |||||  |||||||| ||| ||||||||| ||||  |||||||||||||||||||||||| |||||||||||| | ||||||    
T  82338 ttgtcttttaaaaaatgattccactaatgccacttccactacttttaatatttcttttttatataagaaatggacaaaccaatccattactac 82430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 220 - 375
Target Start/End: Complemental strand, 105671 - 105518
Alignment:
Q  220 cctagtatagcttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctc 319  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||| |||| |||| ||||||||||||||||| | || |||||||||| |||||    
T  105671 cctagcatagcttcaaaattttactattgaattagtaaaaaatgataattttataaaaatcttgaatccattaagatatcctt-caaagctttt-ctctc 105574  T
Q  320 ttgcataaagtagagagggctttccatgtgttcatagacacaccacatatacaact 375  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  105573 ttgcataaagtagagagggctttccatgtgttcatagacacgccacatacacaact 105518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 143 - 359
Target Start/End: Original strand, 81981 - 82196
Alignment:
Q  143 tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaaccta--gtatagcttcaaaattt 240  Q
    ||||||| |||||||||||| |||||| |||| ||||  ||||||||||| |||||||||| | |||||||||  ||||||   | ||||||||| |  |    
T  81981 tttctctctggtccaaaaagaagaaaccatgctcctttctattacaataatctccaagaatcaaatataatacacaacctaagatctagcttcaagagat 82080  T
Q  241 tactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttttctctcttgcataaagtagagagggct 340  Q
    |||||||||||||||||||| | |||||||||||||||| || |||||||||| ||||| || |||| | |||||||| |||||||||||||||||||||    
T  82081 tactattgaattagtaaaat-taataattctatacaaattttaaatccattaaaataccctt-caaaac-ttttctcttttgcataaagtagagagggct 82177  T
Q  341 ttccatgtgttcatagaca 359  Q
    ||| |||||||||| ||||    
T  82178 ttctatgtgttcattgaca 82196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 89988 - 90076
Alignment:
Q  400 ctagaacattaaagtttataaagtcccttttatcccattctttactaattgaagcaacaattccaagttttcctattcgataaaccaaa 488  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||| |||||    
T  89988 ctagaacattaaagtttataaagtctcttttatcccattctttactatttgaagcaactatcccaagtttttctattcgataacccaaa 90076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 89847 - 89896
Alignment:
Q  311 ttttctctcttgcataaagtagagagggctttccatgtgttcatagacac 360  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  89847 ttttctcttttgcataaagtagagaggactttccatatgttcatagacac 89896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 105730 - 105681
Alignment:
Q  141 cttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaat 190  Q
    |||||||||||||||| |||||||||||| |||||||||| | |||||||    
T  105730 cttttctctttggtccgaaaaggagaaaccatgcgccttcctgttacaat 105681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 30806 - 30855
Alignment:
Q  311 ttttctctcttgcataaagtagagagggctttccatgtgttcatagacac 360  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  30806 ttttctcttttgcataaagtcgagagggatttccatgtgttcatagacac 30855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University