View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_13 (Length: 368)
Name: NF1154_low_13
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 35262841 - 35263124
Alignment:
| Q |
13 |
aatatactgaacagcactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgggacttcc |
112 |
Q |
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| T |
35262841 |
aatatactgaacaacactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgggacttcc |
35262940 |
T |
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| Q |
113 |
aactcttgaaacattattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattcc |
208 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35262941 |
aactctagaaacattattctgccaaccaagacacaagacccctt--gcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattcc |
35263038 |
T |
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| Q |
209 |
ttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcctaaactga |
294 |
Q |
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| T |
35263039 |
ttcaagaaagagaccactcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactga |
35263124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 35248103 - 35248311
Alignment:
| Q |
15 |
tatactgaacagcactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgggacttccaa |
114 |
Q |
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||||||||| | || |||||||||||||||||| ||||| | ||| |||||| ||||| ||||||||||||||| |||||||||||||||| |||| ||| |
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| T |
35248103 |
tatactgaagaacaataagcaatataaagtgtgaatatattttacaaagaaagagtttagaacaataatatataatatgttgaaaagttggaactt-caa |
35248201 |
T |
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| Q |
115 |
ctcttgaaacattattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattcctt |
210 |
Q |
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| T |
35248202 |
atcttcaaacgttgttctgccatccaagacataagacccc--ttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattcctt |
35248299 |
T |
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| Q |
211 |
caagaaagagac |
222 |
Q |
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||| ||||||| |
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| T |
35248300 |
caaataagagac |
35248311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 35270406 - 35270542
Alignment:
| Q |
153 |
ttgcatagtatagtaaatgctgcttaattgtgttat--ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctc |
250 |
Q |
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||||||||| ||| |||| || ||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||| ||| |
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| T |
35270406 |
ttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttccaattaccaccctttgtctg |
35270505 |
T |
|
| Q |
251 |
caacaaattcatctggacttcttcattttctatgcct |
287 |
Q |
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| || ||||||||||||||||||||||||||||||| |
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| T |
35270506 |
tatcacattcatctggacttcttcattttctatgcct |
35270542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 35276531 - 35276631
Alignment:
| Q |
172 |
ctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttc |
271 |
Q |
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||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||| || ||||||||| ||||| |
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| T |
35276531 |
ctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagaccactcttcca---accaccctttatctccatcacattcatctgaacttc |
35276627 |
T |
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| Q |
272 |
ttca |
275 |
Q |
| |
|
|||| |
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|
| T |
35276628 |
ttca |
35276631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 35251966 - 35252027
Alignment:
| Q |
44 |
tgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgg |
105 |
Q |
| |
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|||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35251966 |
tgtgcatatactttccgaagaaacagtttggaacaataatatatagtatgttgagaagttgg |
35252027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 35147351 - 35147419
Alignment:
| Q |
168 |
aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
236 |
Q |
| |
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|||| |||||||| || ||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
35147351 |
aatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta |
35147419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 35199926 - 35199987
Alignment:
| Q |
175 |
cttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
236 |
Q |
| |
|
||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| ||||| |
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| T |
35199926 |
cttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaatta |
35199987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 35190359 - 35190427
Alignment:
| Q |
168 |
aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
236 |
Q |
| |
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|||| |||| ||| || ||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
35190359 |
aatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaatta |
35190427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 35224921 - 35225019
Alignment:
| Q |
189 |
ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcct |
287 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||| |||||||||| |||| ||||||| || | | | |||| ||||||||||||| ||||| |||| |
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| T |
35224921 |
ttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcct |
35225019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 35219069 - 35219114
Alignment:
| Q |
189 |
ttaggcctaatttctattccttcaagaaagagaccactcttccaat |
234 |
Q |
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|||||||||| |||||||||||||| ||||| ||| |||||||||| |
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| T |
35219069 |
ttaggcctaacttctattccttcaacaaagaaacctctcttccaat |
35219114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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