View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_15 (Length: 342)
Name: NF1154_low_15
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 2272742 - 2272436
Alignment:
| Q |
16 |
atgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaaacattattcattcttctgctatttatgaaaaagaatggtaaaa |
115 |
Q |
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| T |
2272742 |
atgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaagcattattcattcttctgctatttatgaaaaagaatggtaaaa |
2272643 |
T |
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| Q |
116 |
ttagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtca |
215 |
Q |
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| T |
2272642 |
ttagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtca |
2272543 |
T |
|
| Q |
216 |
gatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272542 |
gatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccaga |
2272443 |
T |
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| Q |
316 |
gaagtct |
322 |
Q |
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||||||| |
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| T |
2272442 |
gaagtct |
2272436 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
152 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
226 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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