View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_17 (Length: 338)
Name: NF1154_low_17
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 56401255 - 56401584
Alignment:
| Q |
1 |
aataagcattgtataatcgatgctcattttcatatcattataggctccctgttttagtcttatttcatttcttggttgaattcaaaacaagatggtatga |
100 |
Q |
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| T |
56401255 |
aataagcattgtataatcgatgctcattttcatatcattataggctccctgttttagtcttatttcatttcttggttgaattcaaaacaagatggtatga |
56401354 |
T |
|
| Q |
101 |
cttagacattttgtgtgtgcaccaagttaattttttattactacctacagccaagattttaagccgatggatggactcctctagaatccagaaacataaa |
200 |
Q |
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| T |
56401355 |
cttagacattttgtgtgtgcaccaagttaattttttattactacctacaaccaagattttaagcccatggatggattcctctagaatccagaaacataaa |
56401454 |
T |
|
| Q |
201 |
ccctaaaccagagttcctgtcagagcttattttccgcgaccaccgtgccagaatgcgtctcctccgtgccggagcacctatctgcagccaattgcttaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56401455 |
ccctaaaccagagttcctgtcagagcttattttccgcgaccaccgtgccagaatgcgtctcctccgtgccggagcacctatctgcagccaattgcttaag |
56401554 |
T |
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| Q |
301 |
aaggttaaaaaatatctatttattcttctc |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
56401555 |
aaggttaaaaaatatctatttattcttctc |
56401584 |
T |
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