View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1154_low_19 (Length: 329)
Name: NF1154_low_19
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 82 - 300
Target Start/End: Original strand, 29208467 - 29208685
Alignment:
| Q |
82 |
tgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaattaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208467 |
tgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaattaa |
29208566 |
T |
|
| Q |
182 |
ctaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaata |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29208567 |
ctaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaata |
29208666 |
T |
|
| Q |
282 |
aatgtgtaactatgtaacc |
300 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29208667 |
aatgtgtaactatgtaacc |
29208685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 38378198 - 38378088
Alignment:
| Q |
82 |
tgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaa--agaaagtgaaacaattaggacatagtattaatt |
179 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| || |||||||||||||| |||||| |||| | ||||||||||||| ||||||||||| |
|
|
| T |
38378198 |
tgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaaatgcaaagtagaatg-gaaacaattaggaattagtattaatt |
38378100 |
T |
|
| Q |
180 |
aactaagaggaa |
191 |
Q |
| |
|
||| |||||||| |
|
|
| T |
38378099 |
aaccaagaggaa |
38378088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 38377782 - 38377716
Alignment:
| Q |
229 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatg |
295 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatg |
38377716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University