View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1154_low_2 (Length: 596)

Name: NF1154_low_2
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1154_low_2
NF1154_low_2
[»] chr4 (12 HSPs)
chr4 (30-391)||(55665366-55665727)
chr4 (42-363)||(55635252-55635580)
chr4 (137-363)||(55659261-55659487)
chr4 (34-349)||(54861975-54862293)
chr4 (75-363)||(54627034-54627326)
chr4 (418-518)||(55665741-55665841)
chr4 (180-348)||(3671868-3672036)
chr4 (223-363)||(52985800-52985940)
chr4 (418-518)||(54862338-54862438)
chr4 (453-516)||(55659559-55659622)
chr4 (305-346)||(51315872-51315913)
chr4 (418-518)||(54626913-54627013)
[»] chr2 (1 HSPs)
chr2 (154-362)||(13401431-13401639)
[»] chr8 (1 HSPs)
chr8 (42-380)||(9889520-9889859)
[»] chr7 (1 HSPs)
chr7 (198-357)||(46155184-46155343)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 55665366 - 55665727
Alignment:
Q  30 acttcttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatgtc 129  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55665366 acttcttcatcgtcattggacaaaatcaaacgctcaagagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacacagacaaatgtc 55665465  T
Q  130 ttgcaggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaact 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55665466 ttgcaggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaact 55665565  T
Q  230 ctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccgg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  55665566 ctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagcgcaccatgactgaaaacaagatcacggcacctaggggaatcaccgg 55665665  T
Q  330 caatgtttcccaatgcccacacagcctgcaattttaaggttttagttttcaacatagttcaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55665666 caatgtttcccaatgcccacacagcctgcaattttaaggttttagttttcaacatagttcaa 55665727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 42 - 363
Target Start/End: Complemental strand, 55635580 - 55635252
Alignment:
Q  42 tcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaa---aacctagtattaatacagagacaaatg---tcttgcag 135  Q
    |||||||| |||||||||||||| | || ||| || ||||||||||||||| |||||||   || |||||||||||||| | | ||| |   ||||||||    
T  55635580 tcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctcacctgtacataaaaaataatctagtattaatacacaaataaaggtcttcttgcag 55635481  T
Q  136 gttca-attttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcag 234  Q
    ||| |  ||||||||||||||||||||||| ||||||||||| | ||||| ||||||| ||  |||||||| |||||| |||||| ||||||| ||||||    
T  55635480 gtttagtttttaatttaacaaaaacaacaattacctgctcaaataggggttgtggctttcccctgcaaaagtttgacaaggtccatgtggcaattctcag 55635381  T
Q  235 catagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatg 334  Q
    |||||||||| ||||||||||||||||||||| |||||| || ||||| ||||||||||| | ||||||||||||||||| |||||| |||||||||| |    
T  55635380 catagaaagccttgcttgctcattcaactgggataacagtggaatcagggcaccatgactgagaacaagatcacggcaccaaggggactcaccggcaacg 55635281  T
Q  335 tttcccaatgcccacacagcctgcaattt 363  Q
    ||||||||||||||| |||||| ||||||    
T  55635280 tttcccaatgcccacgcagcctacaattt 55635252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 137 - 363
Target Start/End: Original strand, 55659261 - 55659487
Alignment:
Q  137 ttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagca 236  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||||||| || ||| |||||||| ||||||||| | |||| |||| ||||||||    
T  55659261 ttcagttttaatttaacaaacacaacaactacctgctcaaatgggggtggtggttttcctctgcaaaagtttgacagggccaacgtagcaattctcagca 55659360  T
Q  237 tagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatgtt 336  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| | |||||||||||| || |||||||||||||||||||  ||    
T  55659361 tagaaagctttgcttgctcattcaactgggataacagcgggatcaacgcaccatgactgagaacaagatcacgacaactaggggaatcaccggcaacatt 55659460  T
Q  337 tcccaatgcccacacagcctgcaattt 363  Q
    |||||||| |||| |||||| ||||||    
T  55659461 tcccaatgtccacgcagcctacaattt 55659487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 34 - 349
Target Start/End: Original strand, 54861975 - 54862293
Alignment:
Q  34 cttcatcgtcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatgtc---t 130  Q
    |||| ||||| ||||| |||| |||| |||  | || ||| ||||||||||||| |||||||| ||||  |||||||||||||| ||| ||| |||   |    
T  54861975 cttcttcgtctttggaaaaaaccaaatgcttgagagcgggaagcgctggcctcatctgtccatcaaaattctagtattaatacacagataaaggtcgtct 54862074  T
Q  131 tgcaggttcaattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactc 230  Q
    || ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||  |||||||| |||||| ||||||  |||||  ||    
T  54862075 tgtaggttcagttttaatttaataaaaacaacaattacctgctcaagtgggggttgtggcttgcccctgcaaaagtttgacaaggtccaaatggcatttc 54862174  T
Q  231 tcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggc 330  Q
    |||  ||| |||||| || ||| ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||| ||    
T  54862175 tcaatatataaagctctgtttggtcattcaactgggataacagcgggatcagggcaccatgactgagaacaagatcacgacacctaggggaatcaccagc 54862274  T
Q  331 aatgtttcccaatgcccac 349  Q
    |||||||||||||||||||    
T  54862275 aatgtttcccaatgcccac 54862293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 54627326 - 54627034
Alignment:
Q  75 agcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatgtcttgc---aggttcaattttaatttaac-aaaaacaacaactacct 170  Q
    ||||||| |||||||||||||| ||||  |||||||||||||| ||| ||| ||| |     ||||||| ||||| |||||| |||||||||||||||||    
T  54627326 agcgctgacctcacctgtccatcaaaattctagtattaatacacagataaaggtcatctcagaggttcagttttattttaactaaaaacaacaactacct 54627227  T
Q  171 gctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagcatagaaagctttgcttgctcattcaactgggttaa 270  Q
    |||||| || |||| ||||||||||  |||||||| ||||||| |||||   ||||  ||||||| || |||||  | |||||||||||| ||||| |||    
T  54627226 gctcaagtgcgggttgtggcttgcccctgcaaaagtttgacagcgtccaaacggcatttctcagcctataaagcccttcttgctcattcagctgggataa 54627127  T
Q  271 cagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatgtttcccaatgcccacacagcctgcaattt 363  Q
     ||  ||||||| ||||| ||||| | ||||||||||||||  |||||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  54627126 aagtaggatcagggcaccgtgactgagaacaagatcacggcctctaggggaatcaccagcaatgtttcccaatgcccacgcagcctacaattt 54627034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 55665741 - 55665841
Alignment:
Q  418 ggacaatcccagttctactgtcattacactttagtataaatatacctggtaccgaagatcataactaggtgaactaagtagctcgacaagtattggtact 517  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55665741 ggacaatcccagttctactgtcatgacactttagtataaatatacctggtaccgaagatcataactaggtgaactaagtagctcgacaagtattggtact 55665840  T
Q  518 g 518  Q
    |    
T  55665841 g 55665841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 180 - 348
Target Start/End: Original strand, 3671868 - 3672036
Alignment:
Q  180 ggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggat 279  Q
    ||||| |||| |||||  |||||||| |||||||||| | ||| |||||||||||||||||||  | ||   |||||||||| |||| ||||||||||||    
T  3671868 ggggttgtggtttgcccatgcaaaagtttgacagggttcgcgttgcaactctcagcatagaaatatctgtaagctcattcaagtgggataacagcgggat 3671967  T
Q  280 cagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatgtttcccaatgccca 348  Q
    ||  ||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||||||| |||||    
T  3671968 catggcaccatgactgagaacaagatcacggcaactaggggaatcacaggcaacgtttcccaacgccca 3672036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 52985800 - 52985940
Alignment:
Q  223 ggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaa 322  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||| || ||  |||||||  ||||||||||| |||||||||||||||||| ||||||||    
T  52985800 ggcaactctcagcatagaaagccttgtttgatcattgaactgggatagcaatgggatcaaggcaccatgactgaaaacaagatcacggcacataggggaa 52985899  T
Q  323 tcaccggcaatgtttcccaatgcccacacagcctgcaattt 363  Q
    ||| |||||| |||||| ||||||| |||||||| ||||||    
T  52985900 tcaacggcaacgtttcctaatgcccgcacagcctacaattt 52985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 54862338 - 54862438
Alignment:
Q  418 ggacaatcccagttctactgtcattacactttagtataaatatacctggtaccgaagatcataactaggtgaactaagtagctcgacaagtattggtact 517  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||   ||||| | ||| ||| |||||||||||||||| || || ||||||||||    
T  54862338 ggacaatcccagttctactgctattacattttagtataaacatacctgtgcccgaacagcatcacttggtgaactaagtagcttgataaatattggtact 54862437  T
Q  518 g 518  Q
    |    
T  54862438 g 54862438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 516
Target Start/End: Original strand, 55659559 - 55659622
Alignment:
Q  453 ataaatatacctggtaccgaagatcataactaggtgaactaagtagctcgacaagtattggtac 516  Q
    ||||||||||||| |  |||| |||||  ||||||||||||||||||| |||||||||||||||    
T  55659559 ataaatatacctgctctcgaacatcatcgctaggtgaactaagtagcttgacaagtattggtac 55659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 51315913 - 51315872
Alignment:
Q  305 tcacggcacctaggggaatcaccggcaatgtttcccaatgcc 346  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  51315913 tcacggcaactaggggaatcagcggcaatgtttcccaatgcc 51315872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 518
Target Start/End: Complemental strand, 54627013 - 54626913
Alignment:
Q  418 ggacaatcccagttctactgtcattacactttagtataaatatacctggtaccgaagatcataactaggtgaactaagtagctcgacaagtattggtact 517  Q
    |||||||||| |||||||||  |||||| |||||||| || ||||||||  ||||| ||| | ||  ||||||||||| |||| |||||  |||||||||    
T  54627013 ggacaatcccggttctactgctattacaatttagtattaacatacctggccccgaacatcgtcacatggtgaactaagaagcttgacaaacattggtact 54626914  T
Q  518 g 518  Q
    |    
T  54626913 g 54626913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 154 - 362
Target Start/End: Complemental strand, 13401639 - 13401431
Alignment:
Q  154 aaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagcatagaaagctttgcttgc 253  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||  |||||||| ||||||| ||||| ||||||  ||||||||| ||||||||||| |||    
T  13401639 aaaaacaacaactacctgatcaaatggaggttgtggcttgcccctgcaaaagtttgacagagtccatgtggcatttctcagcattgaaagctttgcctgc 13401540  T
Q  254 tcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatgtttcccaatgcccacacag 353  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| |||||||| ||||  |||||||||||||||||||    
T  13401539 tcattcaactgggttaacagcgggatcagggcaccatggctaagaacaagatcgcggcacctaggtgaatcaccagcaacatttcccaatgcccacacag 13401440  T
Q  354 cctgcaatt 362  Q
    ||| |||||    
T  13401439 cctacaatt 13401431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 42 - 380
Target Start/End: Complemental strand, 9889859 - 9889520
Alignment:
Q  42 tcattggacaaaatcaaacgctcaatagagggcagcgctggcctcacctgtccataaaaaacctagtattaatacagagacaaatgtcttgc--aggttc 139  Q
    |||||||| ||||||||| |||| | || ||| || |||||||||| |||||||||||||| |||||||||||||| | | ||| |||||    ||| |     
T  9889859 tcattggaaaaaatcaaaagctcgagagtgggaagtgctggcctcaactgtccataaaaaatctagtattaatacacaaataaaggtctttttaagggtt 9889760  T
Q  140 aattttaatttaacaaaaacaacaactacctgctcaattgggggtggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagcatag 239  Q
      |||||||| ||||||||||||||||||||||||||   ||||| | || |||||  | |||||| |||||||||| | ||| |||| |||||||||||    
T  9889759 t-ttttaattcaacaaaaacaacaactacctgctcaaacaggggttgcggtttgcccctacaaaagtttgacagggttcgcgttgcaattctcagcatag 9889661  T
Q  240 aaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaaaacaagatcacggcacctaggggaatcaccggcaatgtttcc 339  Q
    |||  | |||| |||||||||| |||| ||||||||||||||  ||||||||||| | |||||||| |||||| ||||||||||||| ||||| ||||||    
T  9889660 aaatatctgctagctcattcaagtgggataacagcgggatcatggcaccatgactgagaacaagataacggcaactaggggaatcacaggcaacgtttcc 9889561  T
Q  340 caatgcccacacagcctgcaattttaaggttttagttttca 380  Q
    ||| ||||||  ||||| |||||| |  |||||||| ||||    
T  9889560 caacgcccacgaagcctacaatttcagagttttagtgttca 9889520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 46155184 - 46155343
Alignment:
Q  198 tgcaaaagcttgacagggtccacgtggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagtgcaccatgactaaa 297  Q
    |||| ||| |||| || ||||| ||||||  ||| ||||||||||| || || ||||||||||| || |  ||||| || | ||  || |||||||  |     
T  46155184 tgcagaagtttgagagtgtccatgtggcatttctaagcatagaaagtttagcatgctcattcaattgcgccaacagaggaagcaaagctccatgaccgag 46155283  T
Q  298 aacaagatcacggcacctaggggaatcaccggcaatgtttcccaatgcccacacagcctg 357  Q
    ||||||||||||||| ||||| ||||| || ||||  ||||||||||||||||| |||||    
T  46155284 aacaagatcacggcatctaggcgaatctccagcaacatttcccaatgcccacacggcctg 46155343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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