View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_20 (Length: 323)
Name: NF1154_low_20
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 6026174 - 6026345
Alignment:
| Q |
123 |
atagggtcaagtccaccaagatgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagcagaacaagccatttggggattatgt |
222 |
Q |
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|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6026174 |
atagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaagcagaacaagccatttggggattatgt |
6026273 |
T |
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| Q |
223 |
atgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
294 |
Q |
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| T |
6026274 |
atgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
6026345 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
221 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
280 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
123 |
atagggtcaagtccaccaagatgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
196 |
Q |
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|||||||||||||||||||| |||||||| || |||||||| || |||||||||||| | |||||| ||||| |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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