View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_27 (Length: 252)
Name: NF1154_low_27
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2348023 - 2347853
Alignment:
| Q |
1 |
aagaagacacaaccaaccgtgcaatcagattaaaaaatatgcgtgtcaagaatacttttgaagaatttaactaggaattttcaagattaagtgatagctt |
100 |
Q |
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| T |
2348023 |
aagaagacacaaccaaccgtgcaatcagattaaaaaatatgtgtgtcaagaatatttttgaagaatttaactaggaattttcaagattaagtgatagctt |
2347924 |
T |
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| Q |
101 |
atagagtaaaactcaagaactgataaaatattcattgatggtaagtaagcatgtaaaaaggatagtatttc |
171 |
Q |
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| T |
2347923 |
atagagtaaaactcaagaactgataaaatattcattgatggtaagtaagcatgtaaaaaggatagtatttc |
2347853 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 2340032 - 2339954
Alignment:
| Q |
61 |
aagaatttaactaggaattttcaagattaagtgat-agcttatagagtaaaactcaagaactgataaaatattcattga |
138 |
Q |
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||||||||||||||||||||||| ||| || |||| |||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
2340032 |
aagaatttaactaggaattttcatgatcaaatgattagcttatagagtaatattcaagaactgataaaatactcattga |
2339954 |
T |
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