View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_3 (Length: 565)
Name: NF1154_low_3
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 88 - 556
Target Start/End: Original strand, 8756293 - 8756761
Alignment:
| Q |
88 |
ctcatgaaacgtgtcttcaccatcataccagctgcagccttccgtaaaacatcctcccatctagaaaactctattggtgatgtttcatggcttcttcgag |
187 |
Q |
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| T |
8756293 |
ctcatgaaacgtgtcttcaccatcataccagctgcagccttccgtaaaacatcctcccatctagaaaactctattggtgatgtttcatggcttcttcgag |
8756392 |
T |
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| Q |
188 |
tatctgcccccgctgatgatcgcggtggcgagtatcttggacttccaccaatagcagccaatgaacctatattatgttttatatgggagcagatcgctat |
287 |
Q |
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| T |
8756393 |
tatctgcccccgctgatgatcgcggtggcgagtatcttggacttccaccaatagcagccaatgaacctatattatgttttatatgggagcagatcgctat |
8756492 |
T |
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| Q |
288 |
gttattcaccggttcacaagaagttcgttctgatgcagctgcttcgcttgtgtcattggcacgaggcagtgaccgatacgggaagcttataattgaagaa |
387 |
Q |
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| T |
8756493 |
gttattcaccggttcacaagaagttcgttctgatgcagctgcttcgcttgtgtcattggcacgaggcagtgaccgatacgggaagcttataattgaagaa |
8756592 |
T |
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| Q |
388 |
ggcggggttggtccacttttaaagctgatcaaagaagggaaagctgatggacaagagaatgctgctagagctattggtctgcttggtcgtgacgcggaga |
487 |
Q |
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| T |
8756593 |
ggtggggttggtccacttttgaagctgatcaaagaagggaaagctgatggacaagagaatgctgctagagctattggtctgcttggtcgtgacgcggaga |
8756692 |
T |
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| Q |
488 |
gtgttgaacatatgattcatgttggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatga |
556 |
Q |
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| T |
8756693 |
gtgttgaacatatgattcatgttggtgtttgttctgtttttgcgaaaattcttaaagaaggtcctatga |
8756761 |
T |
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Back To:
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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 439 - 556
Target Start/End: Complemental strand, 32031758 - 32031641
Alignment:
| Q |
439 |
caagagaatgctgctagagctattggtctgcttggtcgtgacgcggagagtgttgaacatatgattcatgttggtgtttgttctgtttttgcgaaaattc |
538 |
Q |
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| T |
32031758 |
caagagaatgctgcgaaagcaattgggctattgggtcgtgatccggagagtgttgaggttatgattcatgctggtgtttgttctgttttcgcgaagattc |
32031659 |
T |
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| Q |
539 |
ttaaagaaggtcctatga |
556 |
Q |
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| T |
32031658 |
ttaaagaaggtcctatga |
32031641 |
T |
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