View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_31 (Length: 243)
Name: NF1154_low_31
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 55288373 - 55288520
Alignment:
| Q |
74 |
acatagaaaactcctgttctctcttttctagcatctcaaaggaaacaaaagttctaggaatttgatcaaattcaaacttcggtgcttggttttgagagtt |
173 |
Q |
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| T |
55288373 |
acatagaaaactcctgttctctcttttctagcatctcaaaggaaacaaaagttctaggaatttgatcaaattcaaactttggtgcttggttttgagagtt |
55288472 |
T |
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| Q |
174 |
aaagctactacgacagtaagaggaataggtgaaatcccaacataggct |
221 |
Q |
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| T |
55288473 |
aaagctactacgacaataagaggaataggtgaaatcccatcataggct |
55288520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 55287566 - 55287644
Alignment:
| Q |
1 |
atatagtgtaggtaacagttattctttcttcttnnnnnnnncaaagttattctcttttctcatacaccaaaaaacatag |
79 |
Q |
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| T |
55287566 |
atatagtgtaggtaacagttattctttcttcttaaaaaaaacaaagttattctcttttctcatacaccaaaaaagatag |
55287644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 53289100 - 53289063
Alignment:
| Q |
42 |
caaagttattctcttttctcatacaccaaaaaacatag |
79 |
Q |
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| T |
53289100 |
caaagttattctcttttctcatacaccaaaaaagatag |
53289063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 11840713 - 11840754
Alignment:
| Q |
42 |
caaagttattctcttttctcatacaccaaaaaacatagaaaa |
83 |
Q |
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| T |
11840713 |
caaagttattctcttttctcatacaccaaaaaagatagaaaa |
11840754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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