View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1154_low_32 (Length: 237)
Name: NF1154_low_32
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 6026345 - 6026130
Alignment:
| Q |
22 |
aatacaatattcaaggactatagaatgaaggaccacacttgcatttccaactctcaggctcataatttgcatacataatccccaaatggcttgttctgct |
121 |
Q |
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| T |
6026345 |
aatacaatattcaaggactatagaatgaaggaccacacttgcatttccaactctcaggctcataatttgcatacataatccccaaatggcttgttctgct |
6026246 |
T |
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| Q |
122 |
tggtacttgagtagcttcacatggaaaacaaccataacatttatgctcacagcttggtggacttgaccctattttactcacttctctatcattttctacc |
221 |
Q |
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| T |
6026245 |
tggcacttgagtagcttcacatggaaaacaatcatagcatttatgctcacagcttggtggacttgaccctattttactcacttctctatcattttctacc |
6026146 |
T |
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| Q |
222 |
tccatattcttcgaca |
237 |
Q |
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| T |
6026145 |
tcccttttctttgaca |
6026130 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 42824335 - 42824276
Alignment:
| Q |
36 |
ggactatagaatgaaggaccacacttgcatttccaactctcaggctcataatttgcatac |
95 |
Q |
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| T |
42824335 |
ggactgtagaaggaaggaccacatttgcatttccagctttcaggctcataatttgcatac |
42824276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 42824239 - 42824166
Alignment:
| Q |
120 |
cttggtacttgagtagcttcacatggaaaacaaccataacatttatgctcacagcttggtggacttgaccctat |
193 |
Q |
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| T |
42824239 |
cttggaacttgaatggcttcacatggattgcatccataacacttgtgctcacagcttggtggacttgaccctat |
42824166 |
T |
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