View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1154_low_37 (Length: 216)

Name: NF1154_low_37
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1154_low_37
NF1154_low_37
[»] chr5 (4 HSPs)
chr5 (61-206)||(41900181-41900326)
chr5 (27-172)||(32268817-32268961)
chr5 (147-203)||(32268762-32268818)
chr5 (71-111)||(41886296-41886336)
[»] chr7 (4 HSPs)
chr7 (128-202)||(15091347-15091421)
chr7 (130-189)||(10168806-10168865)
chr7 (130-189)||(10176331-10176390)
chr7 (67-108)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (128-198)||(513426-513496)
chr3 (71-113)||(51120330-51120372)
[»] chr4 (7 HSPs)
chr4 (135-198)||(6007662-6007725)
chr4 (130-195)||(55907434-55907499)
chr4 (71-119)||(1488824-1488872)
chr4 (136-191)||(2525761-2525816)
chr4 (70-115)||(1537250-1537295)
chr4 (131-196)||(2168015-2168080)
chr4 (134-178)||(2625367-2625411)
[»] chr2 (2 HSPs)
chr2 (130-195)||(1036176-1036241)
chr2 (71-119)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (130-193)||(32152208-32152271)
chr8 (71-116)||(17642614-17642659)
[»] chr1 (1 HSPs)
chr1 (130-198)||(33161430-33161498)
[»] chr6 (1 HSPs)
chr6 (137-198)||(6395772-6395833)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 41900181 - 41900326
Alignment:
Q  61 ttctggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaatgtatgcttgaaatctctctcactcgtctccaaacag 160  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||   | |||||||||||||||||||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  161 ttgctctccatctccaacaatcttcgattctctctcacagtctgtg 206  Q
    || ||||||||| |||||| ||||||||||||||| ||| ||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctcttacaatctgtg 41900326  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 32268961 - 32268817
Alignment:
Q  27 cagtgatgcaaaaagaagaa---aatcaatgatatatttctggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaa 123  Q
    ||||||||||||||||||||   ||||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||| | || ||| ||||    
T  32268961 cagtgatgcaaaaagaagaagaaaatcaatgat----ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaa 32268866  T
Q  124 tgtatgcttgaaatctctctcactcgtctccaaacagttgctctccatc 172  Q
    |  ||||||||||||||||||  |||||||||||||||| |||||||||    
T  32268865 tcgatgcttgaaatctctctccatcgtctccaaacagttactctccatc 32268817  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 32268818 - 32268762
Alignment:
Q  147 tcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtct 203  Q
    |||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  32268818 tcgtctccaaacagttactctccatcaccaaccgtcttcgattctctctcacagtct 32268762  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  71 tatttaccagatgagtgttgcgaatgtgtcttcaaattcct 111  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 15091347 - 15091421
Alignment:
Q  128 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtc 202  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||| ||||||| ||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctctcagagtc 15091421  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 10168806 - 10168865
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 189  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 10176331 - 10176390
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 189  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  67 ttcatatttaccagatgagtgttgcgaatgtgtcttcaaatt 108  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 513426 - 513496
Alignment:
Q  128 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 198  Q
    |||||||||||||||||   |||||| |||||||| ||||||||| |||||||||| ||||||||||||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctcac 513496  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 51120330 - 51120372
Alignment:
Q  71 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctca 113  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 6007725 - 6007662
Alignment:
Q  135 aatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 198  Q
    |||||||||| |||||||| |||||||| ||||||||| |||||| ||| ||||||||||||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcac 6007662  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 195  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 1488824 - 1488872
Alignment:
Q  71 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 119  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaacgacg 1488872  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 2525816 - 2525761
Alignment:
Q  136 atctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattct 191  Q
    ||||||||| |||||||| |||||||| || |||||| |||||| |||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattct 2525761  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 1537250 - 1537295
Alignment:
Q  70 atatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaac 115  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  1537250 atatttacctgatgagtgttgggaatgtgtattcagattcctcaac 1537295  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 2168080 - 2168015
Alignment:
Q  131 ttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctc 196  Q
    ||||| ||||||||| | |||||||| ||||| || |||||| |||| | ||||||||||||||||    
T  2168080 ttgaagtctctctcagttgtctccaagcagtttctgtccatcaccaatagtcttcgattctctctc 2168015  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 2625367 - 2625411
Alignment:
Q  134 aaatctctctcactcgtctccaaacagttgctctccatctccaac 178  Q
    ||||||||||| || ||||||||||| || |||||||||||||||    
T  2625367 aaatctctctcgctagtctccaaacattttctctccatctccaac 2625411  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 195  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 45244526 - 45244574
Alignment:
Q  71 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 119  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacg 45244574  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 32152271 - 32152208
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctct 193  Q
    |||||| || ||||| ||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctct 32152208  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 17642614 - 17642659
Alignment:
Q  71 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacg 116  Q
    |||||||| ||||||||||| || | ||||||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctcaacg 17642659  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 33161498 - 33161430
Alignment:
Q  130 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 198  Q
    |||||| ||||| || ||||||||||||||||| ||||||||| | || | |||||||||||| |||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcac 33161430  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 6395833 - 6395772
Alignment:
Q  137 tctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 198  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||  |||||||||| || |||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcactcac 6395772  T

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